Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1251 ATGTCACAGCAAAGGCAATTCCAGATGGTGGCAGGGCAACACAACGACACGACACTGACCAAAATCTTTGTGGGAGGGCTAGCTTGGGAGACTCAAAGGGACACAATGAGGAGGTATTTTGAGCAGTTCGGAGAGATCCTTGAAGCTGTTGTTATCACAGACAAGAACACAGGGAGATCCAAGGGCTATGGCTTTGTCACGTTTAAGGATCCAGAGGCAGCCAAGCGAGCATGTCAGAACCCATCTCCATTTATTGATGGAAGAAGAGCAAACTGCAATCTCGCTTCTCTTGGTGCAAACAAGAATCGACCTCCAACTCCTCAACTTGGTACAGGGAGGTTCAGAGCAGCACCTGGAACGGTGGGTTTACCAGCAAATCATGGCTCTTCGTCCACAATTTTCCGTCAACCCACTGGGCAATACACATTTCCATTTTCAGCTTACGGATACTCTGGATATTTGCAAGATTCCATGTTTCCCATGAATTATCATGCTGTGTATGGAGGTCAACAATTTTCACCTTACTACCCATCCAGTGGAGGATCTGGGCTAACAGGGTTGATGAGTAACATTTACCCTTTCTATACTCAATATGCACAGAGTGGACAGGCTCATGGTTATGGAGTTCTGTACCCCCACATGGTACACTTCCCATTTCTTCATCAACAGCACTATGGCTCTGCCTCTCCTCTCCTGTCACTTCCTTCCACGATGCCAATGCCAGCTACTACCAGAGCAGAGGCAGAGACCGCAACGGTGGGGGCAGGTGCTTCACAGGTGTCTGCAGTAAAAGCTTCTGAACAAACCTCTTCAACATAA 819 0.4786 MSQQRQFQMVAGQHNDTTLTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAKRACQNPSPFIDGRRANCNLASLGANKNRPPTPQLGTGRFRAAPGTVGLPANHGSSSTIFRQPTGQYTFPFSAYGYSGYLQDSMFPMNYHAVYGGQQFSPYYPSSGGSGLTGLMSNIYPFYTQYAQSGQAHGYGVLYPHMVHFPFLHQQHYGSASPLLSLPSTMPMPATTRAEAETATVGAGASQVSAVKASEQTSST 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1251 272 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 22 79 IPR000504 GO:0003723
Dere11g1251 272 SMART rrm1_1 21 93 IPR000504 GO:0003723
Dere11g1251 272 SUPERFAMILY RNA-binding domain, RBD 11 118 IPR035979 GO:0003676
Dere11g1251 272 Gene3D - 1 110 IPR012677 -
Dere11g1251 272 PANTHER BOULE-RELATED 11 244 - -
Dere11g1251 272 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 20 97 IPR000504 GO:0003723
Dere11g1251 272 CDD RRM_RBM24_RBM38_like 20 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1251 Dere-ChrDere11 23836301 23838268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1251 16 96 C2H2 Transcription Factor Family AT2G19380 44.444 9.46e-17 78.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere11g1251 11 23836301 23838268 Dere11g1251 11 23836301 23838268 ECH