Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1248 ATGCCGGAAAACATGAGCATTTCTGTGAATGGACAATCTCAAGTCCCTCCTGGCTTCAGGTTCCACCCAACCGAAGAGGAGCTTCTGCAGTACTACTTGAGGAAGAAGGTCTCCTACGAGAAGATTGACCTCGATGTCATTCGCGACGTCGATCTCAACAAGCTCGAGCCATGGGATATTCAAGAAAAGTGTAAGATAGGAACCACCCCACAAAACGATTGGTACTTCTTCAGCCACAAAGACAAGAAGTACCCCACCGGAACCAGAACTAACCGTGCCACGGCGGCCGGATTCTGGAAGGCCACCGGCAGGGACAAGGTGATATACAGCAACGGGAAGAGGATCGGAATGAGGAAGACCCTTGTCTTCTACAAAGGCCGAGCCCCTCATGGCCAGAAATCTGATTGGATTATGCACGAATATAGACTGGACGACAACACCAGCGACGCCAGTATCGTGTCGAATGTGATGGGAGATGGAGCCCAGGAAGAAGGATGGGTGGTGTGCAGAATATTCAAGAAGAAGAACCATCTGAAAAACCTAGAGAGCCCCTTATCTTCGTCCATTATCACCGGAGAAAGCACCAGAAGATCAAGCAACATGTTCGAGTCCGGCGATGAGGAGGGAGCCTTGGAGCAGATACTTCAGCAAATGGGAAGAAGCTGCAAGGAAGAAAACGAAGCGAATTACAGCAACAATGGAAGATTCGCTATGGCATGCTTCAACAATGGCGGTAATAATAATAACAACAATAATATAAGCTACCATGAAAGGTTCTTGAAGCTGCCAAGCTTAGAAAGCCCAAAATCAACAAGCTTAGAAAATAATAACAATGGGTACCACCCCATTATTCCAGACATGGAAGGGTCGTTTACGACCGTTCATCAAATGGACACATCTCACGGTGGTGGGCTCGCCAACTGGGCGGCTCTGGATCGGCTCGTGGCTTCGCAGCTCAATGGCCAGACCGAGGCCTCTAGGCAGCTAGCCTGCTTCAATGACCCCACTAGCAGCACCATGATGGCTTACTGCACTAACGACGTCGTTCACGATCTGCAATTGCCCACCCTACGGTCGTCCTCGTCATCAACATCAACGTCCGCGCACAGGGCAGCTTATGTGAGCCCGCACGCACAGGATTACAGCGCCAGCGAGATTGACCTGTGGAGCTTTGCCAGATCAGCATCGTCGTTGTTGTCGTCGTCCTCGGAGCCACTGTGCCATGTGTCGAACACGTCAGTGTAA 1245 0.506 MPENMSISVNGQSQVPPGFRFHPTEEELLQYYLRKKVSYEKIDLDVIRDVDLNKLEPWDIQEKCKIGTTPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIYSNGKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRLDDNTSDASIVSNVMGDGAQEEGWVVCRIFKKKNHLKNLESPLSSSIITGESTRRSSNMFESGDEEGALEQILQQMGRSCKEENEANYSNNGRFAMACFNNGGNNNNNNNISYHERFLKLPSLESPKSTSLENNNNGYHPIIPDMEGSFTTVHQMDTSHGGGLANWAALDRLVASQLNGQTEASRQLACFNDPTSSTMMAYCTNDVVHDLQLPTLRSSSSSTSTSAHRAAYVSPHAQDYSASEIDLWSFARSASSLLSSSSEPLCHVSNTSV 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1248 414 Gene3D NAC domain 24 179 IPR036093 GO:0003677|GO:0006355
Dere11g1248 414 ProSiteProfiles NAC domain profile. 15 174 IPR003441 GO:0003677|GO:0006355
Dere11g1248 414 Pfam No apical meristem (NAM) protein 16 143 IPR003441 GO:0003677|GO:0006355
Dere11g1248 414 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 249 - -
Dere11g1248 414 FunFam NAC domain-containing protein 24 178 - -
Dere11g1248 414 SUPERFAMILY NAC domain 9 174 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1248 Dere-ChrDere11 23795991 23797675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1248 1 413 NAC Transcription Factor Family AT2G46770 55.213 7.32e-143 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Dere11g1248 NAM 3.8e-36 No_clan