Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1245 ATGTCAGAGGGTGCAGAAATTGATGATCGTGTGGACTTTGATGAGGAAAACTACATGGAAGAGATGGATGATGATGTTGAAGAACAAATATATGATGATGGAGCGGATGGAGGTGGTGACGAAAATGTTGGAGGGAATGTTGATGAACATGAATATGAAGATTCAGTAGCAGAAACTTGTGGGAAGGACAAATATCCTGAAGCAGATGGAAGTGACATTGTGACTGAATCTGCAGAAGATGAGCAAAAGCCATCTTTGATTGATGAAGATGAGAAGGAGAAGCACGATGAACTTCTTGCCCTTCCTCCTCATGGCTCTGAAGTCTTTATTGGGGGACTTCCTCGGGATACATGCGAAGATGATTTAAGAGAATTGTGTGAGCCAATGGGTGATATTCTTGAGGTGAGACTTATGAAAGATAGGGACACAGGAGACGTCAAGGGTTATGCTTTTGTGGCATTTAAAACAAAAGAGGTTGCACAAAAGGCCATTGAAGAGTTGCATAACAAGGAATTTAAGGGCAAAACTTTGAGGTGTTCTGTGTCTGAAACAAAACATAGATTGTTCATTGGTAATGTTCCAAAAAACTGGACAGAGGATGAGTTTAGTAAAGTCATCAAGGGTGTTGGTCCTGGAGTTGAGAACATTGAGCTAATAAAGGACCCCCAAAACGGGAGCAGGAATCGCGGATTTGCTTTTGTTTTGTATTACAATAATGCCTGTGCCGATTATTCACGGAAAAAGATGTCAAATGCAAATTTTAAGCTAGATGGTAATACCCCCACTGTCACATGGGCAGATCCAAAGAACTCATCTGATCATTCTGCTTCCTCACAGGTTAAAGCTCTTTATGTGAAAAACATACCTGACAATACTACTACTGAGCAACTGAAGGAACTTTTCTGTCGCCATGGGGAAGTAACAAAAGTGGTCATGCCTCCTGGCAAAGCGGGAGGGAAACGTGACTTCGGTTTCATTCATTATGCGGAGAGGTCAAGTGCATTGAAGGCCATAAAAGATACAGAAAAATATGAAATAGACGGCCAAGCGTTGGAAGTTGTTCTTGCAAAGCCTCAAACCGAGAAAAAATCTGATGGAGGTTATGCCTACAATCCTGGGCTTCATCCACATCCTGGGTATGGTGGCTTTTCAGGAAATATGTATGGCTCTGTAAGGGCTGGATATGGTGTCACGGGTGGTTATCAACAGCCAGTGATATACGGTAGGGGTCCAATGCCAGCAGGAATGCAGATGGTCCCAATGGTATTACCTGATGGTCGTATTGGCTATGTCCTTCAGCAGCCTGGTGCACAGATGCCGGCTCCCCGACCCCGCAGAAGTGATCGGAACAATGGTCCAAGCAATCAGTCGGGGCGAGGAGGAGTTAGTGGCAATGATGAGGGCAATCGTAGTAGAAGGTATCGACCCTATTAA 1434 0.44 MSEGAEIDDRVDFDEENYMEEMDDDVEEQIYDDGADGGGDENVGGNVDEHEYEDSVAETCGKDKYPEADGSDIVTESAEDEQKPSLIDEDEKEKHDELLALPPHGSEVFIGGLPRDTCEDDLRELCEPMGDILEVRLMKDRDTGDVKGYAFVAFKTKEVAQKAIEELHNKEFKGKTLRCSVSETKHRLFIGNVPKNWTEDEFSKVIKGVGPGVENIELIKDPQNGSRNRGFAFVLYYNNACADYSRKKMSNANFKLDGNTPTVTWADPKNSSDHSASSQVKALYVKNIPDNTTTEQLKELFCRHGEVTKVVMPPGKAGGKRDFGFIHYAERSSALKAIKDTEKYEIDGQALEVVLAKPQTEKKSDGGYAYNPGLHPHPGYGGFSGNMYGSVRAGYGVTGGYQQPVIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGAQMPAPRPRRSDRNNGPSNQSGRGGVSGNDEGNRSRRYRPY 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1245 477 SUPERFAMILY RNA-binding domain, RBD 103 271 IPR035979 GO:0003676
Dere11g1245 477 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 254 IPR000504 GO:0003723
Dere11g1245 477 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 178 IPR000504 GO:0003723
Dere11g1245 477 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 283 351 IPR000504 GO:0003723
Dere11g1245 477 Gene3D - 269 402 IPR012677 -
Dere11g1245 477 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 268 IPR000504 GO:0003723
Dere11g1245 477 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 187 267 - -
Dere11g1245 477 MobiDBLite consensus disorder prediction 448 464 - -
Dere11g1245 477 MobiDBLite consensus disorder prediction 27 88 - -
Dere11g1245 477 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Dere11g1245 477 SUPERFAMILY RNA-binding domain, RBD 275 384 IPR035979 GO:0003676
Dere11g1245 477 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 14 468 - -
Dere11g1245 477 SMART rrm1_1 282 354 IPR000504 GO:0003723
Dere11g1245 477 SMART rrm1_1 187 264 IPR000504 GO:0003723
Dere11g1245 477 SMART rrm1_1 107 180 IPR000504 GO:0003723
Dere11g1245 477 MobiDBLite consensus disorder prediction 435 477 - -
Dere11g1245 477 Gene3D - 187 267 IPR012677 -
Dere11g1245 477 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 8 186 - -
Dere11g1245 477 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 281 358 IPR000504 GO:0003723
Dere11g1245 477 CDD RRM_SF 108 180 - -
Dere11g1245 477 Gene3D - 14 186 IPR012677 -
Dere11g1245 477 MobiDBLite consensus disorder prediction 43 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1245 Dere-ChrDere11 23728004 23734293 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1245 108 447 Eukaryotic Initiation Factors Gene Family AT2G23350 25.459 1.47e-18 86.7