Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1240 ATGAGCATGAAGGCAGCAAAACCTCGGACCCGGGTGGGAAAATACGAGCTAGGAAAAACCATTGGCGAGGGTAGCTTCGCGAAGGTCAAGTTTGCGAGAAACGTTGAGACAGGGCAAAGCGTCGCCATCAAAATCCTCGACCGTAACCATGTTCTTCGACACAAGATGATGGAACAGCTGAAGAGAGAAATTTCAGCGATGAAGCTGATCAAACATCCGAATGTTATTAAAATATTTGAGGTGATGGCAAGTAAAACAAAGATTTACATTGTCCTGGAGTTTGTTGATGGGGGAGAACTATTTGACAAAATAGCTAACGATGGGAGACTTGAGGAGAACGAAGCAAGGCAATATTTCCAACAACTTATTAATGCTGTTGATTACTGTCATAGTAGGGGCGTTTTTCACAGAGATTTGAAGCCTGAGAATCTTCTTCTAGACTCAAATGGTGTTCTTAAAGTTTCAGATTTTGGATTGAGTACATACTCACAGCAAGATGATGCATTACTACGCACTGCTTGTGGAACCCCAAATTATGTTGCTCCTGAGGTAATTAATGCTAAAGGTTATGATGGTTCAGCATCTGATATCTGGTCCTGTGGGGTCATTCTCTTCGTTCTGATGGCTGGGTACTTGCCTTTTGATGAGCCGAATTATATGGCTTTGTATAGGAAAATTGGCAAGGCTGAATTCTCATGCCCATCATGGTTTACGCCAGATGCAAAGAAACTGCTGAAGAGAATTCTTGATCCAAACGCTACTACAAGGATAAAAATGCCTGAACTTTTAGAAGATGAATGGTTCAAGAAAGGATACAAGCCTGCATCTTTTGAAGAGGAGGAGGGTATAAATGTAGATGATGTAGCTGCAGCGTTCAATGATTCTAAGGAAAATCTTGTGACAGAAAGGAAAGAAAAACCTGTCTCCATGAATGCGTTTGAGCTCATTTCTATGTCACAGAGTTTCAATCTTGACAGTTTGTTTGAGAAGGAAAGGGGCCTTGTGAAGCGAGAAACCCGATTTACTTCACAGCGCCCTGCACATGAAATTATGTCTAAAATTGAGGAAGCTGCCAAGCCACTGGGATTTAATGTTCACAAGAAAGACTACAAGATGAAGCTTAAAGGTGACAAGAGTGGAAGGAAGGGCCACCTCTCTGTGGCTACTGAGGTTTTCGAAGTGGCTCCCTCGTTGCACATGGTGGAGCTGCGGAAGACCGGGGGTGACACACTGGAGTTTCACAAGTTCTACAAAAACTTCTCGTCAGGATTGCAAGACGTAGTGTGGCCCAATGAAGGAAAAACTGAAGAAAAACTTGAACGATCAAGCTAG 1332 0.4287 MSMKAAKPRTRVGKYELGKTIGEGSFAKVKFARNVETGQSVAIKILDRNHVLRHKMMEQLKREISAMKLIKHPNVIKIFEVMASKTKIYIVLEFVDGGELFDKIANDGRLEENEARQYFQQLINAVDYCHSRGVFHRDLKPENLLLDSNGVLKVSDFGLSTYSQQDDALLRTACGTPNYVAPEVINAKGYDGSASDIWSCGVILFVLMAGYLPFDEPNYMALYRKIGKAEFSCPSWFTPDAKKLLKRILDPNATTRIKMPELLEDEWFKKGYKPASFEEEEGINVDDVAAAFNDSKENLVTERKEKPVSMNAFELISMSQSFNLDSLFEKERGLVKRETRFTSQRPAHEIMSKIEEAAKPLGFNVHKKDYKMKLKGDKSGRKGHLSVATEVFEVAPSLHMVELRKTGGDTLEFHKFYKNFSSGLQDVVWPNEGKTEEKLERSS 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1240 443 FunFam Non-specific serine/threonine protein kinase 8 308 - -
Dere11g1240 443 Pfam Protein kinase domain 15 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere11g1240 443 ProSiteProfiles Protein kinase domain profile. 15 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere11g1240 443 FunFam Non-specific serine/threonine protein kinase 6 94 - -
Dere11g1240 443 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Dere11g1240 443 Gene3D Kinase associated domain 1, KA1 304 430 - -
Dere11g1240 443 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672|GO:0006468
Dere11g1240 443 SMART serkin_6 15 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere11g1240 443 CDD CIPK_C 311 424 - -
Dere11g1240 443 Gene3D Phosphorylase Kinase; domain 1 4 94 - -
Dere11g1240 443 FunFam Non-specific serine/threonine protein kinase 304 430 - -
Dere11g1240 443 Gene3D Transferase(Phosphotransferase) domain 1 95 295 - -
Dere11g1240 443 SUPERFAMILY Protein kinase-like (PK-like) 12 286 IPR011009 -
Dere11g1240 443 ProSiteProfiles NAF domain profile. 305 329 IPR018451 GO:0007165
Dere11g1240 443 Pfam NAF domain 307 367 IPR004041 GO:0007165
Dere11g1240 443 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 12 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1240 Dere-ChrDere11 23634445 23640079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1240 2 438 CBL-interacting serine-threonine protein kinases AT1G01140 74.664 0.0 692
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Dere11g1240 Pkinase 1e-72 CL0016