Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1234 ATGGAGGAGTTGATGATCTCTCCTGCTTCCTCTTCTTCTCTGGTGTCTCTGTCTCACCCCCAGGAAAACCCACCATCACTTCAGCAAAAGCTTCAATTTTTACTTCAGACCCAACCCCACTGGTGGCTCTACGGAATTTTGTGGGAAGCCTCCCACGACGACAATGGCCGCCTTTCCTTGTCCTGGGCGGACGGGCATTTTCAAGGCACCAAACGCCCCGTCTCTTCAGAGCGAAGGAAGTTTGTCAATGGTATCCAGTCTCTAATCGATGACGTCGAGAGCCCCAACGGCACCATCGACGACAATATCAACGACGTTGAATGGTTCTACGTCATGTCCTTGACTCGCATGTTCTCCCTCGCCGATTCCTCCTCCCCCTCACTCCCGGGTAAGGCATTCACCTCCGGTTCTCTGCTTTGGTTACATCTTACCGAACACGAGCTTCAACTTTACAATTGCGAGAGAGCAAAAGAAGCCTCCATGCACGGAATTCGAACCCTGATCTGTATTCCCACCAATCACGGAGTTCTCGAAATGGGTTCCTCCGATATCATCGCAGAAAACTGGGGTCTTATCCAACAAGCCAAAACTCTGTACGGCTCGTCGGATCTCGCCCGAAGCATCCGGCCCAATAATAAAAAACAACCCCAACCAAATCAAATATTGGACGTCGACCAGAACATTTTTTTCTCCGACATGGGCATTATCGCCGGCGTACGGGTAGAAGGAGAAGAAGAAGAAGACAATTCCTGTGGCAAAACCCAGAAGAAAGATTCCTCCGCTCTCAAGTTCGGGTCGTACGTAGAATCAGAGCATTCACATTCGGATTCAGACTGCCCGGGGATCGAAAAACGACCCGCCAAGAGAAGAGGGAAAAAGCCCGGGCTGGGCCGCGAGACGCCCTTGAACCACGTGGAGGCGGAGCGGCAGCGGCGGGAGAAGCTGAACCACCGGTTCTACGCGCTACGCGCCGTGGTCCCACACGTGTCGAGAATGGATAAGGCTTCGCTGTTATCAGACGCCGTGGCTTACATCAACGAGCTCAAAGGCAAGATCGAGGAACTGGAGTCGCAGCTTCAAAGAGAGTCTGCGAACAACACTAGTTGTAAGAAAGTGAAGCTGGAAATGGCGGAGACGGTGGAGTCCACGGTGGAGCAGTCTGGGCCTGGCGGTGGGCTGGGGCTTGGGCTGGGTGGGCTGGTGGTGGATGTTAAGATCATAGGGCCGGATGCTATGGTTAGGGTTCAGTCGAAGAACAGAAACCACCCTGGAGCGAGGCTGATGGATGCGTTGCGAGAATTGCAGCTTCAGGTGCACCATGCTAGCATGTCATGTGTGAATGAGATTATGCTTCAAGACGTCGTCGTTAAGATCCCTCTCGGGCTGAGAAGCAACGAGGGTGTGATTAAATCTGCTATTCTCAGGAGATTGGATCAGTAG 1440 0.5278 MEELMISPASSSSLVSLSHPQENPPSLQQKLQFLLQTQPHWWLYGILWEASHDDNGRLSLSWADGHFQGTKRPVSSERRKFVNGIQSLIDDVESPNGTIDDNINDVEWFYVMSLTRMFSLADSSSPSLPGKAFTSGSLLWLHLTEHELQLYNCERAKEASMHGIRTLICIPTNHGVLEMGSSDIIAENWGLIQQAKTLYGSSDLARSIRPNNKKQPQPNQILDVDQNIFFSDMGIIAGVRVEGEEEEDNSCGKTQKKDSSALKFGSYVESEHSHSDSDCPGIEKRPAKRRGKKPGLGRETPLNHVEAERQRREKLNHRFYALRAVVPHVSRMDKASLLSDAVAYINELKGKIEELESQLQRESANNTSCKKVKLEMAETVESTVEQSGPGGGLGLGLGGLVVDVKIIGPDAMVRVQSKNRNHPGARLMDALRELQLQVHHASMSCVNEIMLQDVVVKIPLGLRSNEGVIKSAILRRLDQ 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1234 479 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 299 348 IPR011598 GO:0046983
Dere11g1234 479 Gene3D - 297 366 IPR036638 GO:0046983
Dere11g1234 479 PANTHER MYC 12 476 IPR045084 GO:0003700|GO:0006355
Dere11g1234 479 Coils Coil 338 372 - -
Dere11g1234 479 CDD bHLH_AtAIB_like 297 361 - -
Dere11g1234 479 MobiDBLite consensus disorder prediction 269 285 - -
Dere11g1234 479 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 27 198 IPR025610 -
Dere11g1234 479 Pfam Helix-loop-helix DNA-binding domain 303 348 IPR011598 GO:0046983
Dere11g1234 479 MobiDBLite consensus disorder prediction 293 310 - -
Dere11g1234 479 MobiDBLite consensus disorder prediction 264 310 - -
Dere11g1234 479 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 291 361 IPR036638 GO:0046983
Dere11g1234 479 MobiDBLite consensus disorder prediction 1 23 - -
Dere11g1234 479 SMART finulus 305 354 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1234 Dere-ChrDere11 23577279 23578718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1234 23 477 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00870 36.831 7.79e-72 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere11g1234 bHLH-MYC_N 8.5e-43 CL0161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere11g1234 11 23577279 23578718 Dere11g1234 11 23577279 23578718 ECH