Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1228 ATGTTAGATCATCATATGATGGAATATTCTCCTTCAGCAGAAGTTGCAGAAGCAGAAGCTTATAGCAGCACAGCTTTACCAGGAGGAGTCACGAGGAAAAGGAAGAGCAACAAAATCCAGAGAAGGTTCAGTGATGAGCAAATCAAATCATTGGAATCCATGTTTGAGACAGAGTCAAGGCTTGAGCCGAGGAAGAAGTTGCAGCTGGCAAGAGAGCTTGGCTTGCAGCCAAGACAGGTTGCTATATGGTTCCAGAACAAGAGGGCTAGATGGAAGTCAAAGCAGATTGAAAGAGACTATAGCATACTTAGAGGCAATTATAGCAGCTTGGCTTCACGGTTTGAAGCTCTGAAGAAGGAGAAGGAGGCATTGCTAATTCAGTTGCAGAAGCTCAATGATCTAATACAGAAGCCAAAAGAGCAAGCTCAGTGTTATCCACAAATCAAATCAACAAACAGCATGGATAGTGAATCAGAAAATGGGGAAACTGTTAAAGGAGAACCTGAGGTAAAGCCAAGCCCACCAATGGAGCGATCAGGGCACGTACTAGGCGTTCTCTCAGATGATGACAGCAGCATAAAGGCAGAATACTTTGGCCTTGAAGATGAACCTACTCTTCTGAATTTTGTTGAGAAAGCTGATGATTCCTTGACTTCATCAGAAGATTGGCGTTCTTTTGACTCTGATGACCTCTTAGGCCAGTCTGGCGGTGGTTACCAGTGGTGGGATTTCTGGTCCTGA 741 0.444 MLDHHMMEYSPSAEVAEAEAYSSTALPGGVTRKRKSNKIQRRFSDEQIKSLESMFETESRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQIERDYSILRGNYSSLASRFEALKKEKEALLIQLQKLNDLIQKPKEQAQCYPQIKSTNSMDSESENGETVKGEPEVKPSPPMERSGHVLGVLSDDDSSIKAEYFGLEDEPTLLNFVEKADDSLTSSEDWRSFDSDDLLGQSGGGYQWWDFWS 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1228 246 MobiDBLite consensus disorder prediction 145 183 - -
Dere11g1228 246 CDD homeodomain 38 95 IPR001356 GO:0003677
Dere11g1228 246 Pfam Homeobox associated leucine zipper 94 135 IPR003106 GO:0006355|GO:0043565
Dere11g1228 246 PRINTS Lambda-repressor HTH signature 74 90 IPR000047 GO:0003677
Dere11g1228 246 PRINTS Lambda-repressor HTH signature 65 74 IPR000047 GO:0003677
Dere11g1228 246 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 35 165 IPR045224 GO:0003700
Dere11g1228 246 MobiDBLite consensus disorder prediction 145 159 - -
Dere11g1228 246 SMART HOX_1 37 98 IPR001356 GO:0003677
Dere11g1228 246 FunFam Homeobox-leucine zipper protein ATHB-7 21 94 - -
Dere11g1228 246 SUPERFAMILY Homeodomain-like 24 95 IPR009057 -
Dere11g1228 246 Pfam Homeodomain 41 92 IPR001356 GO:0003677
Dere11g1228 246 MobiDBLite consensus disorder prediction 160 174 - -
Dere11g1228 246 ProSitePatterns 'Homeobox' domain signature. 69 92 IPR017970 GO:0000981|GO:0006355
Dere11g1228 246 Coils Coil 114 134 - -
Dere11g1228 246 ProSiteProfiles 'Homeobox' domain profile. 34 94 IPR001356 GO:0003677
Dere11g1228 246 Gene3D - 28 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1228 Dere-ChrDere11 23477800 23478653 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1228 8 246 Homeobox Transcription Factor Family AT2G46680 53.282 3.45e-71 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Dere11g1228 Homeodomain 2.1e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere11g1228 11 23477800 23478653 Dere11g1228 11 23477800 23478653 ECH