Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1216 ATGTCATTTCGGAGCATTGTTCGTGATGTAAGGGATAGTTTTGGGAGTTTATCTAGATCGAGTTTTGATGTTAGGCCAACTGGTCATCACCGAGGAAAGTTAGAGGAGAGTGACAACACATGGCCTGCTCAAAAGCATGTTGTTGCATGCGCTGTAGTTTGCCGGTCTTGGAAGAACATGTGCAAAGAAATTGTGAAGAGCCCAAAATTCTGTGAGTATTTTATTTCCATGGATGCTAACAACATCTCAAGATCAAGTAGCACTTATATTGGAAAGCTGAGATTAAACTTTCTTGGTACGAAGTTCATAATATATGATACACATCCTCCATTCACTTCTGCCCATATACACCCTCCTGGGACTGGGAAGACAAGCCGGAGGTTTTACTCCAAAAAGGTTTTCGCCAAAGGTTCCATCTGTATCTCTTTCTTAAAGTCTCTTGATCACTCTATTGAGTTCAGTAGTGCAACATTTTCTGAGATTGGGGCATCCTATAGTAACAAGGATGAGGAAGGCAAGATAAGACCCTTGATCCTAAAAAACAAACCTCCAAGATGGCATGAACAGTTGCAATGCTGGTGCCTCAACTTCCAAGGACGGGTAACGGTTGCCTCTGTTAAAAACTATCAGTTGATTGCTGCCTCCCAACCAGCTACTGGCACACCCACACTATCTGAACTAGGCCCACCAGATCATGATAAGATAATTCTGCAGTTTGGCAAAGTTAGGAAAGATATGTTCACCATGGATTATCGGTATCCTTTATCTGCTTTCCAGGCTTTCACAATATGCTTGAGCAGCTTTGACACCAAATTGGCTTGCGAATAG 828 0.4239 MSFRSIVRDVRDSFGSLSRSSFDVRPTGHHRGKLEESDNTWPAQKHVVACAVVCRSWKNMCKEIVKSPKFCEYFISMDANNISRSSSTYIGKLRLNFLGTKFIIYDTHPPFTSAHIHPPGTGKTSRRFYSKKVFAKGSICISFLKSLDHSIEFSSATFSEIGASYSNKDEEGKIRPLILKNKPPRWHEQLQCWCLNFQGRVTVASVKNYQLIAASQPATGTPTLSELGPPDHDKIILQFGKVRKDMFTMDYRYPLSAFQAFTICLSSFDTKLACE 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1216 275 Pfam Tub family 160 270 IPR000007 -
Dere11g1216 275 Pfam Tub family 67 137 IPR000007 -
Dere11g1216 275 Gene3D Tubby Protein; Chain A 55 275 IPR025659 -
Dere11g1216 275 PRINTS Tubby superfamily signature 179 196 IPR000007 -
Dere11g1216 275 PRINTS Tubby superfamily signature 197 213 IPR000007 -
Dere11g1216 275 PRINTS Tubby superfamily signature 232 251 IPR000007 -
Dere11g1216 275 PRINTS Tubby superfamily signature 253 275 IPR000007 -
Dere11g1216 275 PRINTS Tubby superfamily signature 73 89 IPR000007 -
Dere11g1216 275 PRINTS Tubby superfamily signature 89 113 IPR000007 -
Dere11g1216 275 SUPERFAMILY Tubby C-terminal domain-like 65 275 IPR025659 -
Dere11g1216 275 PANTHER TUBBY-RELATED 31 71 - -
Dere11g1216 275 Pfam F-box domain 45 66 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1216 Dere-ChrDere11 23303647 23304935 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1216 33 275 TUB Transcription Factor Family AT1G43640 42.700 1.35e-77 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Dere11g1216 Tub 3e-49 CL0395