Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1212 ATGGGAAGAGCTCCTTGCTGCTCCAAAGTTGGATTGCACAGAGGACCATGGACTCCTAAGGAGGATGCATTGCTCACCAAATACATCCAAGCTCATGGAGAAGGCCAATGGAGATCCTTGCCCAAAAGAGCTGGACTTCTAAGGTGTGGAAAAAGTTGTCGACTAAGATGGATGAACTATCTGAGACCAGACATAAAGAGAGGGAACATAACACCCGAAGAAGACGACCTCATAATCCGAATGCATTCGCTTCTGGGAAATCGATGGTCTCTCATCGCAGGAAGATTACCAGGACGAACAGATAATGAGATCAAGAACCACTGGAACACTCATCTCAGTAAAAGGCTCCGAAGCCAAGGAACTGACCCCAACACCCACAAGAAACTATCATCAACAGTACCTTTTGTAGATAATTATAACTCAAAGAAGAAGCAGAGTAAGAAGAAGCAGAAGAGAGCCAAGGCACAAGAAAAAGAAGAAGAAGAAGCTGAAGAAGAAGGGGAGAAGAAGACAATAGTGTATCTACCAAAGCCTATAAGAATCACAGCCTTGTCTTCGATCCCCAGAACTGATAGTAATTATAACTTCAACTTATTGGAGTCAAGCTCGGCTAGTGGATCTACGAGCCAAGAGAAGGAGGAAGACAAAAAAGTGAACGTTCTTTGGGGGGAGAATGATAATTATAATAATCATAATTATAATAATAATAGTTATAATAATGATGATGACGATGGGTTTGTTGGGTTGCTTGAGGAAGAGAACGACTTGGTCAACGGTTCTGATATGGAGGGGCAATCGGAGTTTCCAACGTCGGCCGAGCAAGATGGGACGCTGGAGAAGCTGTACGAGGAGTACTTCCAGCTCTTGAATAACCAAGAAAGCCAAGAGGAGTTGGAGTCTTTTGCTGAATCTCTATTGGTTTGA 924 0.434 MGRAPCCSKVGLHRGPWTPKEDALLTKYIQAHGEGQWRSLPKRAGLLRCGKSCRLRWMNYLRPDIKRGNITPEEDDLIIRMHSLLGNRWSLIAGRLPGRTDNEIKNHWNTHLSKRLRSQGTDPNTHKKLSSTVPFVDNYNSKKKQSKKKQKRAKAQEKEEEEAEEEGEKKTIVYLPKPIRITALSSIPRTDSNYNFNLLESSSASGSTSQEKEEDKKVNVLWGENDNYNNHNYNNNSYNNDDDDGFVGLLEEENDLVNGSDMEGQSEFPTSAEQDGTLEKLYEEYFQLLNNQESQEELESFAESLLV 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1212 307 Gene3D - 71 134 - -
Dere11g1212 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Dere11g1212 307 Gene3D - 14 66 - -
Dere11g1212 307 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Dere11g1212 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Dere11g1212 307 FunFam Myb transcription factor 11 67 - -
Dere11g1212 307 MobiDBLite consensus disorder prediction 114 140 - -
Dere11g1212 307 CDD SANT 16 61 IPR001005 -
Dere11g1212 307 Coils Coil 136 168 - -
Dere11g1212 307 FunFam MYB transcription factor 68 129 - -
Dere11g1212 307 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 233 - -
Dere11g1212 307 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Dere11g1212 307 CDD SANT 71 112 IPR001005 -
Dere11g1212 307 SMART sant 66 114 IPR001005 -
Dere11g1212 307 SMART sant 13 63 IPR001005 -
Dere11g1212 307 MobiDBLite consensus disorder prediction 152 169 - -
Dere11g1212 307 MobiDBLite consensus disorder prediction 114 169 - -
Dere11g1212 307 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Dere11g1212 307 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Dere11g1212 307 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1212 Dere-ChrDere11 23254269 23256152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1212 4 131 MYB Transcription Factor Family AT3G13540 71.875 4.66e-69 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere11g1212 Myb_DNA-binding 8.9e-14 CL0123