Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1206 ATGGAAACGAAAACCCATCAACCATGCGCAGCTTGCAGGATGCTACGCCGGAGATGTGACAGTAAGTGCTTACTTGCACCATACTTTCCGGCCGACGAGGTTGACAAGTTCGCCGTTGTTCACAGAGTCTTCGGTGCTAGCAACGTCATCAAAATGATTCAGATGGTGGAGGAGACGATGAGGGAGGATGCAGTGAAAGCCATAGTGTACGAAGCAATGGCGAGGGTGAGAGATCCAGTGTATGGCAGCGCAGGAGCAATTCTGCAGCTGCAGAAGATGGTTCAGCAACTCAAAGTGGAGCTAGAAACAATGAAGGCTAGGGTTTCAGAGGTGCAAGAACAAAGAGACCAGTTGTTGAGGAATATTCATACCAAATCTCTTCATCATCATCGTGAAGATAACGGTGCTGTGTTTCCCATCAATATTGACCCCTCCTTTGATGACTATTACTCCACTTTGCCGTTAGACCCACTTGAATTTCCTGTACAAAGCGACTGGGTCATGTAG 507 0.4773 METKTHQPCAACRMLRRRCDSKCLLAPYFPADEVDKFAVVHRVFGASNVIKMIQMVEETMREDAVKAIVYEAMARVRDPVYGSAGAILQLQKMVQQLKVELETMKARVSEVQEQRDQLLRNIHTKSLHHHREDNGAVFPINIDPSFDDYYSTLPLDPLEFPVQSDWVM 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1206 168 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 117 - -
Dere11g1206 168 Coils Coil 87 121 - -
Dere11g1206 168 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
Dere11g1206 168 SUPERFAMILY Spectrin repeat 71 123 - -
Dere11g1206 168 Pfam Lateral organ boundaries (LOB) domain 8 105 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1206 Dere-ChrDere11 23177936 23178579 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1206 8 158 AS2 family AT1G07900 45.161 6.41e-44 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Dere11g1206 LOB 1.7e-38 No_clan