Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1197 ATGGCACATCTGGAGAGTAATCTCAGGGTTCCGGCGAGTTCTCATGGGGAAACAGGTTTCGGAGAAGACGATCTGTATACAGAATTATGGAAGTTGTGTGCAGGGCCTTTGGTGGATGTTCCTCGTGATGGAGAGAGAGTTTTCTACTTCCCTCAGGGTCACATGGAACAATTGCAAGCATCAACGAATCAGGAATTAAACCAGCAAATTCCCCATTTCAATCTTCCATCCAAGATTCTATGTCGTGTTATGCACATTCAGCTATTGGCGGAACAAGAAACTGATGAAGTGTATGCTCGTATCACTCTGCTTCCAGAATCAGATCAAACTGAGCCTGCAAGTCCAGATCCAAGCCCACCTGAAACCCAGAAACATGCATTTCATTCATTTTGCAAGATATTAACGGCCTCCGATACGAGCACACATGGAGGATTTTCAGTTCTGAGGAAGCATGCCACTGAGTGCCTGCCTCAGCTGGACATGACCCAAGTAACACCAACTCAGGAGTTGGCTGCCAAGGATCTTCATGGGTTTGAGTGGAAGTTTAAGCATATATTTAGAGGTCAACCAAGGAGGCACTTGCTTACAACTGGCTGGAGTACATTTGTCACGTCCAAAAGATTAGTTGCAGGAGATGCATTTGTGTTTCTAAGGGGTGAGAATGGGGAACTAAGAGTTGGTGTTAGCCGTCTGGCTCGGCAACAGAGTCCGATGCCTTCATCTGTGATATCAAGCCAGAGCATGCACCTTGGAGTGCTTGCCACTGCCTCACATGCTGTTATGACTGGCACTATGTTCGTGGTTTATTACAAACCAAGGACTAGCCAGTTCATTATTGGTTTGAATAAGTATCTGGAGGCAGTCAGCAATAAATTCTCAGTTGGCATGCGTTTCAAAATGAGATTTGAGGGAGAGGAATCACCGGAGAGAAGGTTCTCAGGTACTATTGTTGGTGTTGGGGATGCTTCTTCAGAGTGGTCAGACTCTAAGTGGAGGTCATTGAAGGTCCAATGGGATGAACCAGCAACAATTCCGAGGCCAGAGAGGGTTTCTCCATGGGAGATAGAGCCTTTTGTAGCATCTGCTGCTGTAAATGTTTCTCATCCAGCAGTAAAGAACAAAAGGCTTCGGCCTGCTGATGTTCCATCTTCCGATATTACTTCCAACTCAGCTGCTTCACCTTTTTGGTATCATGGTTCATCCCAGTCCCATGAGCATACACAATTAGGTAATGGTGTGGAAGTCCAAAGCAATGAGAGCCAGGTTGTATGGTCCCTGAGGCAGAAAGAAATCAGTAGCAATCCATTGAACACTAACAGTAGCTCGAGAGGCCGAGTTGAAGGAATATGGCCTGCTTCTCCACCTTTGAATGTCTCTTCAAACTTTTTTCCTGACCCAAGAAACAACAAAGCTGGTGCATCAGCACAAACTTCTATCTCTGGTTATCCTCCTGTTTTAAATAGGCCTAATGATGGTCAATATGATCAAGTGCAAAATGGGAAAAGGAGTGAGAATTCCAAGAATATCTGGATATTTGGAGTTAATTTGACTGAAAATTCAAACACTGTTTCTTCTCCCTCACAGAAAGAATTGGGATACCTAACTACTATTCCTAGTGGTCCCAAAGAATCTGCCCCTCCTGCTGCTGCATGTGAAACTGAGAAGAGTCAGAATCCCAACAATAATACAGTGTCCCAAAAGGAGCAAAAGCGAATTGATGCATCACCAAACGAGAGGCAGAGCAAGCAGGCCTCTGTACTGTCCATGAGGTCTCGTACTAAGGTGCAAATGCAAGGTTTTGGCGTTGGTCGAGCAGTTGACTTGACCATGTTGAAAGGGTATGATGATCTCTTAGATGAGCTTGAGAAACTGTTTGATATCAAAGGAGAGCTTCGCCCGCAAAACAAGTGGGCAGTAACTTTTACTGATGATGAGAATGACATGATGCTTGTGGGTGATGATCCATGGCCGGAGTTCTGTACTATGGTTAAGAGGATTTTCATTTATTCAAGTGAAGAGGTAAAGAAGATGAATCCCAAATTCAGAATTCCTGCATCATCATCAGAGGGTGAAGAGACTGTTGGGAGCTTGGATTTACAAAATGGGGATGAAATGGAATGA 2121 0.446 MAHLESNLRVPASSHGETGFGEDDLYTELWKLCAGPLVDVPRDGERVFYFPQGHMEQLQASTNQELNQQIPHFNLPSKILCRVMHIQLLAEQETDEVYARITLLPESDQTEPASPDPSPPETQKHAFHSFCKILTASDTSTHGGFSVLRKHATECLPQLDMTQVTPTQELAAKDLHGFEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFLRGENGELRVGVSRLARQQSPMPSSVISSQSMHLGVLATASHAVMTGTMFVVYYKPRTSQFIIGLNKYLEAVSNKFSVGMRFKMRFEGEESPERRFSGTIVGVGDASSEWSDSKWRSLKVQWDEPATIPRPERVSPWEIEPFVASAAVNVSHPAVKNKRLRPADVPSSDITSNSAASPFWYHGSSQSHEHTQLGNGVEVQSNESQVVWSLRQKEISSNPLNTNSSSRGRVEGIWPASPPLNVSSNFFPDPRNNKAGASAQTSISGYPPVLNRPNDGQYDQVQNGKRSENSKNIWIFGVNLTENSNTVSSPSQKELGYLTTIPSGPKESAPPAAACETEKSQNPNNNTVSQKEQKRIDASPNERQSKQASVLSMRSRTKVQMQGFGVGRAVDLTMLKGYDDLLDELEKLFDIKGELRPQNKWAVTFTDDENDMMLVGDDPWPEFCTMVKRIFIYSSEEVKKMNPKFRIPASSSEGEETVGSLDLQNGDEME 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1197 706 Gene3D - 586 678 - -
Dere11g1197 706 Gene3D - 127 231 IPR015300 -
Dere11g1197 706 SUPERFAMILY DNA-binding pseudobarrel domain 121 259 IPR015300 -
Dere11g1197 706 FunFam Auxin response factor 291 362 - -
Dere11g1197 706 SMART B3_2 130 232 IPR003340 GO:0003677
Dere11g1197 706 MobiDBLite consensus disorder prediction 682 706 - -
Dere11g1197 706 Pfam B3 DNA binding domain 130 230 IPR003340 GO:0003677
Dere11g1197 706 Gene3D - 291 364 - -
Dere11g1197 706 Pfam AUX/IAA family 562 679 IPR033389 -
Dere11g1197 706 SUPERFAMILY CAD & PB1 domains 585 666 - -
Dere11g1197 706 MobiDBLite consensus disorder prediction 551 570 - -
Dere11g1197 706 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 24 678 IPR044835 GO:0003677|GO:0006355|GO:0009725
Dere11g1197 706 FunFam Auxin response factor 128 232 - -
Dere11g1197 706 ProSiteProfiles PB1 domain profile. 590 682 IPR000270 GO:0005515
Dere11g1197 706 ProSiteProfiles B3 DNA-binding domain profile. 130 232 IPR003340 GO:0003677
Dere11g1197 706 MobiDBLite consensus disorder prediction 462 501 - -
Dere11g1197 706 Pfam Auxin response factor 256 335 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Dere11g1197 706 MobiDBLite consensus disorder prediction 519 590 - -
Dere11g1197 706 MobiDBLite consensus disorder prediction 462 484 - -
Dere11g1197 706 CDD B3_DNA 128 230 IPR003340 GO:0003677
Dere11g1197 706 FunFam Auxin response factor 585 678 - -
Dere11g1197 706 MobiDBLite consensus disorder prediction 519 534 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1197 Dere-ChrDere11 23032438 23036709 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1197 19 683 B3 DNA Binding Superfamily AT1G59750 52.226 0.0 642
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Dere11g1197 AUX_IAA 1.6e-11 CL0072