Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1192 ATGAAGGTTGAGTCGGGTTTAGGAGGTGTCTTGTGGAATGATGAAGAAAAAGCCATGGTTGCATCGGTTCTGGGAACTCGAGCTTTCGAATACTTGATATCGAACCCTGTTTCGAACGAGAATCTGTTAATGGCAGTGGGAAGCGACGAAAATTTACAGAACAAACTTTCGGATCTCGTGGACCGTCCAAACGTATCGAATTTCAGCTGGAACTATGCGATTTTCTGGCAAATATCGCAGTCGAAGAAATCCGGGGATTGGGTTTTGGGTTGGGGAGATGGGTGTTGCAGAGAACCCAAGGGAGAAGAAGAAGATGGAGTTAGAGGGCTTCTTAGTCTTCGCTTGGAGAAAGATGAGATGCAACAGAGTATGAGGAAAGGGGCGCTTCAGAAGCTTCACACAACATTTGGGGGCTCAGATGAGGATAATTACGCCTTTGGATTAGACAGAGTTACTGATACAGAAATGTTCTTTCTGGCTTCCATGTACTTCTCCTTCCCTCGCGGCCATGGTGGCCCTGGTAAGTGCTTCGCCTCCGGGAAGCATGTGTGGCTTTTTGATGGACAGAAATCTAACTCTGATTACTGTGTGAGATCGTTTTTGGCAAAATCAGCTGGAATTCAGACTATAGTTTTAGTCCCTACCGACACGGGAGTGGTGGAATTGGGTTCTGTGAGGATGGTAGGAGAGAACATAGAATTGTTGCAGACGATAAAATCAGTGTTTTCATCCCAATCGTCGTTTCCTAGGGTTTCCCCACTTTCACCATTGCCTGTTGTGGTGAATGACAAGAGAGATGAAAATGGTCTCTTTTCTGGTTTGGCAATTGGGGATAAGGTGGAGGGAGTTCCAAAGATTTTTGGGCAGGATTTGAACTCAGGAATCCCTGGTCGTTCCCATTTTAGGGAGAAACTTGCTGTGAGGAAAATGGAGGAGAGGCCCTGGGGAGGCCAAGGCCACCCCAATGGCAATAGCATTAGCTTTCCGAATGCTCAAAATGGCGTTCATGGTTCAAGTTGGGCTGCAAATCAAGGTAGTAAGCAGGCAAGCCCTGCTGAGATTTATACTTCAAGGTCCTCGGCTTGCAATGTACCAGAGGTAGTCAACCGGTCTAGGCAAGATTTTCGGCTTAACAGTTACCAACCACAAAGGCAGGTGCAAATGCAAATTGATTTCTCGGGAGCCACTTCAAGGCCTTCTGTGAGACCGATCAGTGCTGAGTCGGAGCTTTCTGATGTTGAAGCTCCATGCAAAGAAGAGCAGCCAGGTGCAACGGATGAAAGGAGGCCAAGGAAACGGGGTAGAAAGCCTGCCAATGGAAGGGAGGAACCCCTGAATCATGTGGAAGCTGAGAGGCAAAGGCGTGAGAAGCTGAACCAGCGCTTCTATGCACTACGATCCGTTGTCCCCAATATATCCAAGATGGACAAGGCTTCTTTGCTGGGAGATGCCATTGCATATATCAATGAGCTTCAAGCAAAACTCAAGATCATGGAATCTGAGAGGGAGAGATTTGGAAGCACTTCAAGGGATGGACCGGTATTGGAGGCTGATCCAAAAGCACAAAATAACAACCAAGCTACCGATGTTGATATTCAAGCTGCCCAAGATGAGGTGATAGTGAGGGTGAGCTGCCCTCTCAATGCTCACCCTGTTTCAAGAGTAATCCAAGCACTTAAAGAGGCAAAAATTAGTGTTGTTGAGTCCAAACTTGCAGCTGCAAATGATACCGTCTTTCATACCTTTGTAATCAAGTCTCAAGGATCCGAGCAGCTGACAAAGGAGAAGTTAATTGCAGCATTTTCCCAAGAATCCAACTGCTTACAGTCATTGTCACCGGTTGGGTAG 1848 0.4692 MKVESGLGGVLWNDEEKAMVASVLGTRAFEYLISNPVSNENLLMAVGSDENLQNKLSDLVDRPNVSNFSWNYAIFWQISQSKKSGDWVLGWGDGCCREPKGEEEDGVRGLLSLRLEKDEMQQSMRKGALQKLHTTFGGSDEDNYAFGLDRVTDTEMFFLASMYFSFPRGHGGPGKCFASGKHVWLFDGQKSNSDYCVRSFLAKSAGIQTIVLVPTDTGVVELGSVRMVGENIELLQTIKSVFSSQSSFPRVSPLSPLPVVVNDKRDENGLFSGLAIGDKVEGVPKIFGQDLNSGIPGRSHFREKLAVRKMEERPWGGQGHPNGNSISFPNAQNGVHGSSWAANQGSKQASPAEIYTSRSSACNVPEVVNRSRQDFRLNSYQPQRQVQMQIDFSGATSRPSVRPISAESELSDVEAPCKEEQPGATDERRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAIAYINELQAKLKIMESERERFGSTSRDGPVLEADPKAQNNNQATDVDIQAAQDEVIVRVSCPLNAHPVSRVIQALKEAKISVVESKLAAANDTVFHTFVIKSQGSEQLTKEKLIAAFSQESNCLQSLSPVG 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1192 615 MobiDBLite consensus disorder prediction 312 346 - -
Dere11g1192 615 Pfam Helix-loop-helix DNA-binding domain 446 492 IPR011598 GO:0046983
Dere11g1192 615 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 445 505 IPR036638 GO:0046983
Dere11g1192 615 MobiDBLite consensus disorder prediction 320 346 - -
Dere11g1192 615 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 52 242 IPR025610 -
Dere11g1192 615 MobiDBLite consensus disorder prediction 412 453 - -
Dere11g1192 615 MobiDBLite consensus disorder prediction 503 524 - -
Dere11g1192 615 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 442 491 IPR011598 GO:0046983
Dere11g1192 615 Gene3D - 435 507 IPR036638 GO:0046983
Dere11g1192 615 MobiDBLite consensus disorder prediction 390 453 - -
Dere11g1192 615 Coils Coil 488 508 - -
Dere11g1192 615 FunFam Transcription factor bHLH13 435 509 - -
Dere11g1192 615 PANTHER MYC 29 600 IPR045084 GO:0003700|GO:0006355
Dere11g1192 615 MobiDBLite consensus disorder prediction 390 404 - -
Dere11g1192 615 CDD bHLH_AtAIB_like 439 504 - -
Dere11g1192 615 SMART finulus 448 497 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1192 Dere-ChrDere11 22916474 22918321 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1192 7 615 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 52.730 0.0 581
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere11g1192 bHLH-MYC_N 6.3e-56 CL0161