Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1182 ATGATAGTTAAGCGGACTATGAAAATTGAAATGCCGAACTTGAAGCGATGTAAGTTAGAGGAGCTCGATGAGGAGGACTTTGTATGTGCGGCGAATCCCAAGAAGCGGAGGGCAAATGGGTTCCATTTTCCTGGTATACCAGGTGAGGCTAAAGATATGAGCACTGGTTCTGAGTCTTGGTGCAGTAAAGGATCGCATTGCGGTGGTGAGTTACAGTCAATTTCAAATTCTATGAAATTGAATGATAGAACAGTACTAAACCGGGCCTCAGAAAGGCATCGGCCTCCATTATTGCAGTCATCGCGAGGTCGCTCTCAGATGCTTCCATTGAGGTTCAGAGATTCGGTCCTTCATACGTGGAAGAATAAAAGAATCAAACTGGAGGACACGGAGTCCAGCTTTATTGAAGATAGTATTTTAGGGGAAGATGGGTCGAAGTTTGGTGGAATGGGATATGTAAAACAGGGACTGAGAGTTAACTGTGGTTTCAAAAGTTCAAAGTGTTTTTCGTATCCTGAAATGGAGGAGGAAGGAGACTTGGGTGCCTTAGATTCGAGTGATTTTGACGTCGGGGGGCATGAGAATTCGTTTAGTACCAGTTCAACGACAATTAACGAGAGTCGTTCAGCATTAGTTAAAATCGAGAGTTACGCGTCCGGATTTAATCCTGTAGGTGTAGTCCCAAAACCTAATGGGAATGCTGAAAAGAGGACAGACATCTACAAACTGGAGGATTTTGCTTCCGGCGATATAGTTTGGGCAAAATGTGGGAAGAGATATCCGGCTTGGCCTGCTATAGTGATTGATCCCATCTTGCAAGCTCCAAAATCGGTCCTGAGCTGTTGCGTTCCAGGTGCAATTTGCGTTATGTTTTTTGGGTATTCCAAAAATGGAAAGCAAAGGGACTATGCATGGGTGAGACAGGGAATGATATTCCCATTCATGGAATTCATGGACAGATTCCAGGGGCAGACCCGGCTGTACAAGAGCAAACCAAGTGAATTTCAGATGGCACTAGAGGAGGCTTTGTTGGCAGAAGATGGTATTCTGGACTCGCATTTGGCCGCAGATCAAATTAGTAAGAGTAACGTTAAAGCTCATCCCAGTGGATTTGTAGAGGTTACAGGTCCAAATAATGATCAGGAATACTGCCAGGACCAGGATGCAAGACTGTGTGCTGGCTGTGGTTTGATGTTACCTTGCAAAACCATGAAGAAGATTAAGGAATCTAGTCGTGTTCAACTTTATTGCAAACATTGCTCAAAGTTACGAAAATCCAAACAATATTGTGGCATTTGCAAAAAGATTTGGCACCATTCAGATGGTGGGAATTGGGTATGCTGTGATGGTTGTAATGTTTGGGTGCATGCTGAGTGTGATAAAATCTCCAGCAAACTTTTAAAGGATCTGGAACATATAGATTACTATTGCCCTGATTGCAAAGCAAAAGTCAAGAGTAAATTAGTAGCATCACAATCATACAAGTCAGAAATCAAATCAATTGAAAGTAACCAAAAACACTTAATACCTGAGAAGGTAACAGTGGTGTGCAATGGCATGGAAGGAATTTACATTTCAAGTCTTCATTTAGTTATGTGCAAGTGTGGTTCTTGTGGGTCAAGGAAGCAGACATTGAGTGAATGGGAACGGCATACAGGTTGCAGAGCCAAAAAATGGAAATTTAGTGTGAAAGTAAAAAGCACGATGCTACCACTAGAAAAATGGATTACTGAACACAATTCTCAAGCTGGAGTTTCTCTACGGTTAGATCAGCAGCAGGTACTTGCCTTTTTGCAAGAGAAGTATGAGCCAGTTTATGCAAAATGGACTACTGAGAGGTGTGCTATTTGTAGATGGGTTGAAGATTGGGATGATAACAAAATTATTATCTGTAACAGGTGCCAAATAGCAGTCCACCAAGAATGCTATGGGGTGAAGAATGCTAAGGATTTTACTTCTTGGGTTTGTAAAGTATGTGAAACTCCTGATGTTGATAGGGAGTGTTGCCTCTGTCCGGTAAAAGGTGGTGCTCTGAAGCCAACTGATGTTGAAATGCTTTGGGTTCATGTAACATGTGCTTGGTTCCGACCTGAAGTTATTTTCCAAAACCATGAGACAATGGAACCTGCCATTGGAATCCTTAAAATTCCTCCAAATTCCTTTTCAAAGATTTGCATTATCTGTAAACAAAGCCATGGCTCCTGCTTAAGTTGTTGCAAATGTGCTACTTATTTTCATGTGATGTGCGCATCAAGAGCAGGATATAGTATGGAATTGCATTCAATGGAGAAGAATGGGAATCAGATAACAAAGAAGCTAATATATTGTGCGGTTCATAGGGTCCCAAAACTTGATTCAGTACTGGTTGTGCATACACCCCTGGGGGTTTTCTCTCCTGGAACATCGTTTCAAAATCACAAGGGATGCTTCAGGGGATCAAGGCTGGTTTCCTTAAAGAATGTAGAACATCTTGAAGAAACTTCAACTGCTGAGACTTGTGAGGATGAGCCACTCTCTGCTGCTAGATGTCGTGTTTACAGAAGGCCTCTCAACAAGAAGGCTGATGTCTCAATACTTCACATATTGAAGGGACCAAGTCGTCATTCTTTGAGTGCAATAACTCAATTGAACAGCTATAAGGATGCTGAACATTCTAAAGTATTTACTTCACTCAAGGAACGTCTTCATCATTTGCAGAAAACTCAAAAGCATCAAGTTTGCTTTGGAAAATCAGGTATACATGGATGGGGCCTTTTTGCACATCGAGATATACAAGAAGGAGAGATGATTGCTGAGTATTGTGGTGAGCAGGTGAGGCGTAGCATTGCTGATTTAAGAGAAGCAAAGTACCGTTCAGAAGGCAAAGATTGTTATCTGTTCAAGATCAGCGAGGAAGTGGTAATTGATGCAACAGATAAGGGCAATATAGCACGCTTGATAAACCATTCTTGCATGCCGAACTGCTACGCAAGGATCATGAGTTTGGGTGATGAGGAGAGCCGAATTGTTCTTATTGCCAAGACCAATGTTTCTGCCGGTGAAGAACTAACGTATGATTACTTGTTCGATCCGGATGAGCGTGAAGAATTGAAAGTTCCCTGTCGTTGTAAAGCCTCAAACTGTAGGAAATTTATGAACTAG 3141 0.4196 MIVKRTMKIEMPNLKRCKLEELDEEDFVCAANPKKRRANGFHFPGIPGEAKDMSTGSESWCSKGSHCGGELQSISNSMKLNDRTVLNRASERHRPPLLQSSRGRSQMLPLRFRDSVLHTWKNKRIKLEDTESSFIEDSILGEDGSKFGGMGYVKQGLRVNCGFKSSKCFSYPEMEEEGDLGALDSSDFDVGGHENSFSTSSTTINESRSALVKIESYASGFNPVGVVPKPNGNAEKRTDIYKLEDFASGDIVWAKCGKRYPAWPAIVIDPILQAPKSVLSCCVPGAICVMFFGYSKNGKQRDYAWVRQGMIFPFMEFMDRFQGQTRLYKSKPSEFQMALEEALLAEDGILDSHLAADQISKSNVKAHPSGFVEVTGPNNDQEYCQDQDARLCAGCGLMLPCKTMKKIKESSRVQLYCKHCSKLRKSKQYCGICKKIWHHSDGGNWVCCDGCNVWVHAECDKISSKLLKDLEHIDYYCPDCKAKVKSKLVASQSYKSEIKSIESNQKHLIPEKVTVVCNGMEGIYISSLHLVMCKCGSCGSRKQTLSEWERHTGCRAKKWKFSVKVKSTMLPLEKWITEHNSQAGVSLRLDQQQVLAFLQEKYEPVYAKWTTERCAICRWVEDWDDNKIIICNRCQIAVHQECYGVKNAKDFTSWVCKVCETPDVDRECCLCPVKGGALKPTDVEMLWVHVTCAWFRPEVIFQNHETMEPAIGILKIPPNSFSKICIICKQSHGSCLSCCKCATYFHVMCASRAGYSMELHSMEKNGNQITKKLIYCAVHRVPKLDSVLVVHTPLGVFSPGTSFQNHKGCFRGSRLVSLKNVEHLEETSTAETCEDEPLSAARCRVYRRPLNKKADVSILHILKGPSRHSLSAITQLNSYKDAEHSKVFTSLKERLHHLQKTQKHQVCFGKSGIHGWGLFAHRDIQEGEMIAEYCGEQVRRSIADLREAKYRSEGKDCYLFKISEEVVIDATDKGNIARLINHSCMPNCYARIMSLGDEESRIVLIAKTNVSAGEELTYDYLFDPDEREELKVPCRCKASNCRKFMN 1046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1182 1046 SUPERFAMILY FYVE/PHD zinc finger 427 487 IPR011011 -
Dere11g1182 1046 ProSiteProfiles Post-SET domain profile. 1030 1046 IPR003616 -
Dere11g1182 1046 PANTHER PHD FINGER PROTEINS 72 459 - -
Dere11g1182 1046 SUPERFAMILY Tudor/PWWP/MBT 244 347 - -
Dere11g1182 1046 CDD PHD_TCF19_like 430 480 - -
Dere11g1182 1046 ProSitePatterns Zinc finger PHD-type signature. 614 659 IPR019786 -
Dere11g1182 1046 Gene3D - 239 348 - -
Dere11g1182 1046 SMART PostSET_3 1030 1046 IPR003616 -
Dere11g1182 1046 SMART PHD_3 429 481 IPR001965 -
Dere11g1182 1046 SMART PHD_3 724 780 IPR001965 -
Dere11g1182 1046 SMART PHD_3 613 660 IPR001965 -
Dere11g1182 1046 SUPERFAMILY FYVE/PHD zinc finger 612 675 IPR011011 -
Dere11g1182 1046 ProSiteProfiles Zinc finger PHD-type profile. 427 483 IPR019787 -
Dere11g1182 1046 CDD SET_SETD1-like 893 1042 - -
Dere11g1182 1046 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 420 487 IPR013083 -
Dere11g1182 1046 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 663 781 IPR013083 -
Dere11g1182 1046 SMART PWWP_4 246 315 IPR000313 -
Dere11g1182 1046 Pfam PHD-finger 626 660 - -
Dere11g1182 1046 SMART set_7 904 1027 IPR001214 GO:0005515
Dere11g1182 1046 ProSiteProfiles Extended PHD (ePHD) domain profile. 665 780 IPR034732 -
Dere11g1182 1046 CDD PHD_ATX3_4_5_like 613 659 IPR042011 -
Dere11g1182 1046 FunFam Histone-lysine N-methyltransferase 663 782 - -
Dere11g1182 1046 ProSiteProfiles SET domain profile. 904 1021 IPR001214 GO:0005515
Dere11g1182 1046 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1046 IPR025780 -
Dere11g1182 1046 Pfam PHD-finger 429 482 IPR019787 -
Dere11g1182 1046 Pfam PHD-zinc-finger like domain 667 779 - -
Dere11g1182 1046 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 608 662 IPR013083 -
Dere11g1182 1046 Pfam SET domain 915 1020 IPR001214 GO:0005515
Dere11g1182 1046 ProSiteProfiles Zinc finger PHD-type profile. 611 662 IPR019787 -
Dere11g1182 1046 FunFam Histone-lysine N-methyltransferase 878 1046 - -
Dere11g1182 1046 Gene3D SET domain 822 1046 IPR046341 -
Dere11g1182 1046 ProSiteProfiles PWWP domain profile. 248 317 IPR000313 -
Dere11g1182 1046 Pfam PWWP domain 249 344 IPR000313 -
Dere11g1182 1046 CDD PWWP_AtATX3-like 248 348 - -
Dere11g1182 1046 SUPERFAMILY SET domain 897 1043 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1182 Dere-ChrDere11 22710759 22719226 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1182 387 454 EF-hand Containing Proteins AT5G28340 58.824 2.08e-21 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Dere11g1182 zf-HC5HC2H_2 8.3e-29 CL0390