Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1180 ATGGCCATCCTGAAGGTCGTCTTCTTTCACTTCTTCATCTTCCCTATCATATATACCTTGGAAGATTGCCAATTCTCTAGCTGTGGCAACAGCAGAATCGTTATTCGTTTCCCCTTCGCCCTGCAAGGTGAGCTACATCCATACTGTGGCTATCCTGGTTTCACTTTATCTTGCACAAACGGCGGCCAAACAGTTCTGAAACTTCCTTATTCTGGAGAATTCTACGTGCGCAACATCAACTATGTCACTCAACAGATTCAACTCTACGACCCTAACAATTGCCTCCCCAAGCGTCTTCTAAGTCTCAACCTTTCAGGCTCTCCCCTTGTGGCCATTTTTCGCCGGAACTACACCTTCCTGAGCTGTCCATATCAGAACACAGCCTCACAGTTCACTTCCATTGATTGTCTGAGCAGCTCCACAAATTTTGTGTCAGCTATTCCTTCAGCTGTGCTGGGCAATTCAACGCCCAACCATTGCGTTCTTATTAGCAGACCTTCGATTCCTGTGGGAAGGCCAAGGCTGTTCGAAGAAAGCTCCAGAGATGACCTCAGTGATGATCTTCGGCTAACATGGCACATACCTGATTGCAGAGATTGTGAATCACAAGGGCGTAGGTGTGGATATGAGAACAGAAACAGTACGCGAATCGGGTGCTTCTCTTATTACCAAACAGGCTCTCAGGATGGTCTCAGACTCTTCAGAATCATCACCTTATCGATCACCGGACCAGCTGTGATCGTCGTTGGCCTAGTGGCATGCTACGCCTGCTTCATGGACAGCCGAAGAGGCATTACAGCCAGGAGGTCTGCAACATCAGTATCGCCACAACCTGCCATGGCTAATACTCCCACTTCGACGACGGGTTTGGACGAGCCTACAATAGAGTCGTACCAGAAGGTGGTGCTCGGAGAGAGTCGGAGGTTGCCACAGGGAGCCAACGACGGAACCTGTGCCATATGCCTCTCAGAATACAACACCAAAGACACACTCCGGTGCATCCCTCACTGCACGCACTGCTTCCACAGTGAATGCATCGATGAGTGGCTTCGGATGAACGGTACGTGCCCTGTTTGTCGCAGCTCTCCCTCTCCTTCTCCTTCATATGTCCTATAG 1116 0.4982 MAILKVVFFHFFIFPIIYTLEDCQFSSCGNSRIVIRFPFALQGELHPYCGYPGFTLSCTNGGQTVLKLPYSGEFYVRNINYVTQQIQLYDPNNCLPKRLLSLNLSGSPLVAIFRRNYTFLSCPYQNTASQFTSIDCLSSSTNFVSAIPSAVLGNSTPNHCVLISRPSIPVGRPRLFEESSRDDLSDDLRLTWHIPDCRDCESQGRRCGYENRNSTRIGCFSYYQTGSQDGLRLFRIITLSITGPAVIVVGLVACYACFMDSRRGITARRSATSVSPQPAMANTPTSTTGLDEPTIESYQKVVLGESRRLPQGANDGTCAICLSEYNTKDTLRCIPHCTHCFHSECIDEWLRMNGTCPVCRSSPSPSPSYVL 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1180 371 MobiDBLite consensus disorder prediction 270 291 - -
Dere11g1180 371 SUPERFAMILY RING/U-box 313 365 - -
Dere11g1180 371 ProSiteProfiles Zinc finger RING-type profile. 318 360 IPR001841 -
Dere11g1180 371 Pfam Ring finger domain 317 360 IPR001841 -
Dere11g1180 371 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 3 364 IPR046948 -
Dere11g1180 371 Pfam Wall-associated receptor kinase C-terminal 180 221 IPR032872 -
Dere11g1180 371 CDD RING-H2_EL5-like 318 360 - -
Dere11g1180 371 SMART ring_2 318 359 IPR001841 -
Dere11g1180 371 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 365 IPR013083 -
Dere11g1180 371 Pfam Wall-associated receptor kinase galacturonan-binding 23 90 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1180 Dere-ChrDere11 22701362 22705451 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1180 27 365 C3H Transcription Factor Family AT2G25410 45.245 2.69e-93 282