Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere11g1170 | ATGGCGGATTCTGATGACCCGGCGAAATCTGCTGAAAGCCAACAATCAGAGCAAGTGTGTAGTTTCTTCAGGAAACCGGTTAATAAGAAGAATTTAAGGAAACGAACAAATGATGAAGAAGATGACGAGGGGGATTCAAAAAATGAAAGCTCTTTGTTACATATTCAGAAAAAACCCTTGAAGCCTGACAATAAGTTGTACTTTTCAACTGGTCCCTCAAAGAGCAGCGCATCTACTGTACAAGAGGAGCCTGAAAAACCAATGTTTCAGTTTGAGTCTTCAAAAGAGATTCAAGTTCAACATGATAACAAGGCAACAGCCACTCTAGAGACTGAAACTGAGTTTTCAAGAGATGCTCGAGCCATTCGTGAAAGAGCCCTTAAGCAAGCAGTGGAGAGTTTGAAGGGTAAAGGCACTGGTTCTGGGGATGAAAAATTGTACAGGGGCATCAATAGTTATACAGATTACAAGGCTGGTTTTCGTCGAGAGCAAACAATTGCCAGTGAAAAAGCTGGTGGGGCACATGGTCCTCTTAGGGCATCTGCTCATATAAGAGTTTCAGCTAGATTTGATTATCAGCCAGACATATGTAAGGATTACAAGGAGACTGGTTACTGTGGGTATGGTGATTCATGTAAGTTTATGCATGATCGAGGGGATTACAAGTCTGGGTGGCAGTTGGAGAAGGAATGGGAGGAAGCTGAGAAAGCTAGGAGAATGAGATTGGCTGCAGGAGAGGATTTGGATGAGGGTGCTAATTTGACTGATGAAGATGATGATGATGATTCATTACCATTTGCATGTTTCATTTGTAGGAAGCCCTTTGTGGATCCTGTTGTAACCAACTGCAAGCACTACTTCTGCGAGCATTGTGCATTGAAGCATCATTCAAAGAATAAGAAGTGTTTTGTGTGCAACAAGCCCACTCTTGGCATTTTTAATGCAGCTCACGAGATACGCAAGAAGATGGCTGCTGAGAGTAAATAA | 987 | 0.4235 | MADSDDPAKSAESQQSEQVCSFFRKPVNKKNLRKRTNDEEDDEGDSKNESSLLHIQKKPLKPDNKLYFSTGPSKSSASTVQEEPEKPMFQFESSKEIQVQHDNKATATLETETEFSRDARAIRERALKQAVESLKGKGTGSGDEKLYRGINSYTDYKAGFRREQTIASEKAGGAHGPLRASAHIRVSARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQLEKEWEEAEKARRMRLAAGEDLDEGANLTDEDDDDDSLPFACFICRKPFVDPVVTNCKHYFCEHCALKHHSKNKKCFVCNKPTLGIFNAAHEIRKKMAAESK | 328 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere11g1170 | 328 | Gene3D | - | 189 | 223 | - | - | |
| Dere11g1170 | 328 | FunFam | RING finger protein 113A | 266 | 325 | - | - | |
| Dere11g1170 | 328 | ProSiteProfiles | Zinc finger RING-type profile. | 268 | 306 | IPR001841 | - | |
| Dere11g1170 | 328 | Pfam | Zinc finger, C3HC4 type (RING finger) | 267 | 309 | - | - | |
| Dere11g1170 | 328 | FunFam | Zinc finger CCCH domain-containing protein 1 | 189 | 223 | - | - | |
| Dere11g1170 | 328 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 192 | 217 | IPR000571 | GO:0046872 | |
| Dere11g1170 | 328 | SUPERFAMILY | RING/U-box | 267 | 310 | - | - | |
| Dere11g1170 | 328 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 266 | 325 | IPR013083 | - | |
| Dere11g1170 | 328 | SUPERFAMILY | CCCH zinc finger | 190 | 222 | IPR036855 | GO:0046872 | |
| Dere11g1170 | 328 | SMART | ring_2 | 268 | 305 | IPR001841 | - | |
| Dere11g1170 | 328 | MobiDBLite | consensus disorder prediction | 68 | 83 | - | - | |
| Dere11g1170 | 328 | ProSitePatterns | Zinc finger RING-type signature. | 283 | 292 | IPR017907 | - | |
| Dere11g1170 | 328 | PANTHER | ZINC FINGER PROTEIN 183 | 12 | 327 | IPR039971 | - | |
| Dere11g1170 | 328 | CDD | RING-HC_RNF113A_B | 264 | 314 | - | - | |
| Dere11g1170 | 328 | MobiDBLite | consensus disorder prediction | 1 | 85 | - | - | |
| Dere11g1170 | 328 | MobiDBLite | consensus disorder prediction | 32 | 61 | - | - | |
| Dere11g1170 | 328 | SMART | c3hfinal6 | 191 | 218 | IPR000571 | GO:0046872 | |
| Dere11g1170 | 328 | ProSiteProfiles | Zinc finger C3H1-type profile. | 191 | 219 | IPR000571 | GO:0046872 | |
| Dere11g1170 | 328 | MobiDBLite | consensus disorder prediction | 8 | 22 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere11g1170 | Dere-ChrDere11 | 22491499 | 22493082 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere11g1170 | 7 | 326 | C2H2 Transcription Factor Family | AT1G01350 | 70.625 | 1.09e-170 | 476 |
Transcription factors information