Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1138 ATGGAAATGAAATTCTCTGAACAGAAAATTGTCACCAACAAGTTCGTGAGACTTGGGGTTTCTGGTGTGACTATGACACCAAGAGTCGTTCGGATTTCCGTCACAGACAACGACGCGACTGATTCTTCCAGTGACGAGGAAGAAAATGAAGAACGGTTTTCTCGCCGAGTGAAGAAGCTCGTCCATGAGATCAGAATCAAGGACTTTTCGAGTTTAATGGCTAGTGGAGAAGTTAATGGCGATTCGAATGCGACAGTGAAACAAAAGTCGAAGCAGAGGAAGGGGAGACCTTCTACAGTCACCAGAACGAAACAGAGTCGTCCGAACGGTAAGAAATTCCGCGGCGTCCGGCAGCGGCTGTGGGGACGGTGGGCGGCGGAGATCCGCGACCCGTTTCTTCGAGCTCGGAAGTGGCTCGGCACGTTCGACACGGCGGAGGAAGCGGCCTTGGTTTACGACAGAGAAGCCATTCGGCTAAGAGGAGCCGATGCTCTTACGAATTTAATCAAACCACCTGAGAAATCTCAATCTCAATCTATAGTACTATTACCATCAAGCAATGATGCTTCCCAACGATTTGTGAAAAGTCCTGTGAAGAAAAATAACGAGTGGTTGGAAAATGACTGTGTCTACGATTCGAGCAAAGAGTCTCGAGATTTAGTGTCGTCGTCGTCTTCCTCGCCGACCTCTGTTCTCAGATACGAAGTTGCTGGGTCTCGTGAACCTGCAGGGTGGGCAGCCATGGCAGAATTGAGAGGAGAAGAAGAAGAAAGTTTCCTGTTCGCAGATTCTTCGACGCAATTTGAGAATTGTTGCTACTCCGATTACGAAACTCCTCCTACCTCGACGTTCTTGTTTGAATCCAGTTTGCCCCAATCGATTTCCATTGACATTTTGAGGGACATTCCGTTTCATGTTGACGATGATTTTGAATCTTCCAAATGGGTCGTCGATCATTACTTTCAAGACCCTTTGCCTCTGCAATGA 987 0.4772 MEMKFSEQKIVTNKFVRLGVSGVTMTPRVVRISVTDNDATDSSSDEEENEERFSRRVKKLVHEIRIKDFSSLMASGEVNGDSNATVKQKSKQRKGRPSTVTRTKQSRPNGKKFRGVRQRLWGRWAAEIRDPFLRARKWLGTFDTAEEAALVYDREAIRLRGADALTNLIKPPEKSQSQSIVLLPSSNDASQRFVKSPVKKNNEWLENDCVYDSSKESRDLVSSSSSSPTSVLRYEVAGSREPAGWAAMAELRGEEEESFLFADSSTQFENCCYSDYETPPTSTFLFESSLPQSISIDILRDIPFHVDDDFESSKWVVDHYFQDPLPLQ 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1138 328 CDD AP2 111 167 IPR001471 GO:0003700|GO:0006355
Dere11g1138 328 Gene3D AP2/ERF domain 111 169 IPR036955 GO:0003700|GO:0006355
Dere11g1138 328 PRINTS Ethylene responsive element binding protein signature 113 124 IPR001471 GO:0003700|GO:0006355
Dere11g1138 328 PRINTS Ethylene responsive element binding protein signature 135 151 IPR001471 GO:0003700|GO:0006355
Dere11g1138 328 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 26 238 - -
Dere11g1138 328 SMART rav1_2 112 175 IPR001471 GO:0003700|GO:0006355
Dere11g1138 328 Pfam AP2 domain 112 161 IPR001471 GO:0003700|GO:0006355
Dere11g1138 328 FunFam Ethylene-responsive transcription factor 2 111 170 - -
Dere11g1138 328 MobiDBLite consensus disorder prediction 77 111 - -
Dere11g1138 328 ProSiteProfiles AP2/ERF domain profile. 112 169 IPR001471 GO:0003700|GO:0006355
Dere11g1138 328 SUPERFAMILY DNA-binding domain 112 168 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1138 Dere-ChrDere11 22140737 22141723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1138 3 242 AP2-EREBP Transcription Factor Family AT4G27950 43.320 1.94e-45 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere11g1138 AP2 1.7e-10 CL0081