Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1104 ATGATGGCGGCAGTAAGGTTTTTCTTTCTGAAACGTCTCCAAAATTCTTCAGTCAAGGGTTCTTTGAATGTGGAGTTAATTCAACAACATCACCATATTATGAACCCTACAAGATATGTTGATTTCGTTCATGGAAGATTTCCAAGTAATTCACTGAATCAAGCTTCTTCCAAAGGAGTGTTACAGTTACCTGAATATTTTGCTAAGAATCAGTGTAGAACTTTGACTTCTGAAAACAACATCATCTTCAATTCCAAACCCAATGCTTCATTTTCTCCTCATTTTTCTAGTTTTTTTTTCCACCAAGCTCTTCCTTTTGCTTCAATGACCCAAATGTTGAACCATCGATCATATTTATCATCTCTGAGTGGAAAAGGAAGTAGAGATGGGGATGCTGTAGTTCCAACTGATTCTGGGTCAAGTGACATGAGTGTCAGCACTGATTCTATTGGTGCAAGTCATTGGGCTGATAAAATTAAAGATGCTTTGCAGAGTGCTGTAGAGGCAGTGACATATACAGGGCAAAAGGTTAAAGAGGCCTCTGATGAGCTGACTCCATATGCTCAACAGTTGCTTGACTCACATCCATATCTTAATAATGTGCTTATTCCAGTTGGTGGCACATTGACTGCCACTCTAATAGCATGGCTTGTGATGCCTCGGATTTTGAGGAAATTTCACAAATATGCTATGCAAGGTCCTGCTGCAATATTTTCAGGAAGCATATCTGGGCAGCAAGTTCCTTATGAGAAAAGCTTTTGGGGTGCTTTGGAGGATCCGGTCCGATATTTGGTTACCTTCATGGCATTCTCACAGATTGGTGTTATGGTAGCTCCAACAACTATAGCCTCACAATACCTTGCACAGGCTTGGAGGGGTGCAGCGATCCTTTCATTTGTGTGGTTTTTGCATCGATGGAAAACAAATATTTTGGCACGCAGTTTTTCCTGTCAAAGTTTAGTTGGGCCTGATCGAGAAAAATTGCTTGCTCTTGACAAAATCTCATCCGTTGGTCTATTTGTGATTGGTATAATGGCTTTGGCCGAGGCTTGTGGTGTGGCAGTGCAGTCTATTGTAACTGTTGGCGGGATAGGAGGAGTTGCCTCTGCCTTTGCTGCCAGGGACATTCTTGGGAATGTATTCAGTGGGTTCTCTATGCAGTTTTCGAAGCCCTTTTCAATTGGAGATACAATAAAAGCTGGCTCAGTAGAGGGTCAGGTGGTGGAAATGGGTCTTACTACTACATCATTGCTGAATGCAGAAAAGTTCCCGGTTGTAGTACCAAATTCACTTTTTTCAAGCCAGGTAATAGTGAATAAGTCTCGCGCTGAATGCCGTGCAATCATATCTAAAATTCCTTTGAGGATTGAGGATTTAAATAGAATTCCCAAGATATCAGATGATATAAAGAGCATGCTGAAAACAAATGCAAAGGTTTTCTTAGGAAAAGAGGTTCCTTACTGTTTCTTGTCACGCATAGAAAGTTCATATGCAGAATTGACTCTTGGATATAACCTCAAACACATGCGTAAAGATGAAATGTACTCTGCAGAACAAGATATTCTCCTGCAGGCAGTCCAGATTATTAAGATGCACGGTGCTGCACTTGGCAATACCTGGCAAGACATGTCTTCTGGTTCAGGATGA 1647 0.4117 MMAAVRFFFLKRLQNSSVKGSLNVELIQQHHHIMNPTRYVDFVHGRFPSNSLNQASSKGVLQLPEYFAKNQCRTLTSENNIIFNSKPNASFSPHFSSFFFHQALPFASMTQMLNHRSYLSSLSGKGSRDGDAVVPTDSGSSDMSVSTDSIGASHWADKIKDALQSAVEAVTYTGQKVKEASDELTPYAQQLLDSHPYLNNVLIPVGGTLTATLIAWLVMPRILRKFHKYAMQGPAAIFSGSISGQQVPYEKSFWGALEDPVRYLVTFMAFSQIGVMVAPTTIASQYLAQAWRGAAILSFVWFLHRWKTNILARSFSCQSLVGPDREKLLALDKISSVGLFVIGIMALAEACGVAVQSIVTVGGIGGVASAFAARDILGNVFSGFSMQFSKPFSIGDTIKAGSVEGQVVEMGLTTTSLLNAEKFPVVVPNSLFSSQVIVNKSRAECRAIISKIPLRIEDLNRIPKISDDIKSMLKTNAKVFLGKEVPYCFLSRIESSYAELTLGYNLKHMRKDEMYSAEQDILLQAVQIIKMHGAALGNTWQDMSSGSG 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1104 548 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 155 539 - -
Dere11g1104 548 SUPERFAMILY Sm-like ribonucleoproteins 375 440 IPR010920 -
Dere11g1104 548 Gene3D - 391 439 IPR023408 -
Dere11g1104 548 Gene3D - 286 390 - -
Dere11g1104 548 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 288 373 IPR011014 GO:0016020
Dere11g1104 548 Pfam Mechanosensitive ion channel 333 534 IPR006685 GO:0016020|GO:0055085
Dere11g1104 548 MobiDBLite consensus disorder prediction 122 145 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1104 92 542 Mechanosensitive Ion Channel Family AT4G00290 61.623 0.0 577