Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1101 ATGCCCACCTCTCTCTCGCTATCTCTTCCTTCCACAGGTGAGCTTTTCCTTTCAGGGGTTTCGTTCTCTATTTCTTGGCTTTCACAATTTTATGGAGTGAAACAACAGCATTGCTGGAAAATGGGTGGATGCTGCTGTTCTGCCAGAAAACCTCATCTGCATGGAACACCAGTCTATTATTATTGTTCACCAGCTTTGGAAGAGCGTGACTCATTAACCTCAAATGCTGGTACAACTACTTCACTTGCTGCTGGATTGCTGTTAGGTTTGAACCTGGAAACTTCCACTCCTGATACCTACCAGCCTCCTCCTGCACCTTTGCCATATGATATGGTCTTCGGTCCAGTATCAACAGATTCTGAATCTGGAAGAAAAACAGTTAGTGGTAGTAGTTTTGAAACGTTAATTACATGTGAAGATCTTGAAGAATCAGATTGCAAAGCTCAAGCTAATTCTGAACTTTTATCTCCGAAGAAGATAGACCTATCAAAATCAAATGAATGTCAAGCATTAATGACAGAAGAAGAGGAAGTCTGTCCCATTTGTCTTGAAGAATATGAAGTTGAGAATCCTAAAACTCTGACAAAGTGTGAACACCACTTTCACCTATCTTGCATTCTTGAGTGGATGGAAAGAAGTGATTCCTGTCCTATATGTGATCAGGAGATGATATTTGACTAG 681 0.4082 MPTSLSLSLPSTGELFLSGVSFSISWLSQFYGVKQQHCWKMGGCCCSARKPHLHGTPVYYYCSPALEERDSLTSNAGTTTSLAAGLLLGLNLETSTPDTYQPPPAPLPYDMVFGPVSTDSESGRKTVSGSSFETLITCEDLEESDCKAQANSELLSPKKIDLSKSNECQALMTEEEEVCPICLEEYEVENPKTLTKCEHHFHLSCILEWMERSDSCPICDQEMIFD 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1101 226 CDD RING-H2_AIRP1-like 175 223 - -
Dere11g1101 226 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 76 225 - -
Dere11g1101 226 Pfam Ring finger domain 179 219 IPR001841 -
Dere11g1101 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 224 IPR013083 -
Dere11g1101 226 ProSiteProfiles Zinc finger RING-type profile. 179 220 IPR001841 -
Dere11g1101 226 SMART ring_2 179 219 IPR001841 -
Dere11g1101 226 FunFam Putative E3 ubiquitin-protein ligase RHB1A 155 224 - -
Dere11g1101 226 SUPERFAMILY RING/U-box 171 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1101 Dere-ChrDere11 21598219 21603058 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1101 41 226 C3H Transcription Factor Family AT4G00335 59.893 8.80e-76 225