Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1082 ATGGGAGAAGTTGTAGAGGAGCCTAATCCAGGTGTGGTTGAAGAGAAAATCTACGTTGCTGTGTCCAAAGAAGTGAAAGAGTGCAAATTAAATCTGATATGGGCGATTCAAAATTCTGGAGGAAAGAAGATTTGCATCCTTCATGTTTATGTGCCTTCAACTATGATCCCCATGTTGGGTACAAAGTTTCCAGCAAGTGCACTGCAAGACCAGGAAGTTGAAGCATACAGAGAAATAGAAAGGCAAAACATGCATAAAAGTCTGAATGAGTATCTTTTAATTTGTCAACGGATGGGGGTGCGAGCAGAGAAACTGTATATTGAAATGGATTGCATTGAGAAAGGAATTGTGGAACTAGTGTCCCAGTATAGCATTCGGAAGCTTGTTATGGGAGCGGCATCTGATAAATCCCATTCTAGGAAAATGATGGACCTCAGATCTAAGAAAGCCATTTATGTACGAGAACATGCTACAGCTTCTTGTCATATACAATTCATCTGCAAAGGGCACCTCATACACACAAGGGGATGCAGTTTGGATAAAGGTAATGTAGAGGCTACATCATCTCCTGTGCCACAGCGAGGGCTATACCCTGACGCTGGACGTTCACTCTACTTGAGATCTCAGTCTGTTGAGCTTGGACATAATCATTGGGTAAGACTCACTAATCCAGCTCAAGATCTAATTCGAAGAGTAAGGTCTGCCAATGCTGAACATCAAGGGAGCATAGCAACTGTTTCTTCTCCAGATGGCACTGAAGGATTGTCAACTCCACGTATCAGGTTGAGTACAGAAGTGAGTTCTGACGAGTCAGAAGGGCTGTCTAGAAGGAGTCTTTCCGTTTTCTCAACATTCTCTGATAGTGGTGCAATTGAAGCACCATCAACCCCAGATTTGATCACTAAGCAGAACGAGATTGTATTGGACTCAAGTGAACTTTCTCTGATTAATGCAGATCTTTGCCATTCATCTCCTCCCAGTGTACTGGATGGGGGAATGGACTATAGTCTTTATGATCAACTTGAGCAGGCCATGGGAGAGGCCGAGAATGCTAGGCAGGATAAATACCAAGAAACTATTAGGCGTGGGAAAGCTGAAAGGGAGGCCATTGATGCTATACGCAGGGCTAAAGCCTCTGAAATCTTATATAGAGAGGAGATGAAACTGAGGATAGAGATAGAGGAAGCACTAGAAAAAGCCAAGGAAGAACTGGGACAGATGAAGAGCCAGAGAGATAAAGTAAATGAAGAACTCCAACTTGCCTTAGATCAGAAGTCATCAATAGAGAGTCAAATTGCATTAACAGAACTTATGAAAAAGGAGTTAGAGCAGAAGATTATATCTGCCGTGGATCTATTACAAAGTTATAAGAAAGAACGTGATGAGCTGCAGATGCAGCGTGATAATGCATTGAGAGAGGCTGAGGAGTTGAAGAAAAAACCAGCAGAGGCTTCAAGCACACATGTGCCTCAATTTTTCTTAGAATTCTCTTTTCCAGAGATTGAAGAAGCAACAAATAACTTTAATCTATCCCTAAAGATTGGAGAAGGTGGATATGGAAGTATATATAAAGGTATCTTACGTCACACTGAGGTGGCTATCAAAATTTTGCACCCATACAGTTTGCAGGGGCCCTCAGAGTTTCAACAGGAGGTTGATGTATTGAGTAAGTTAAGGCATCCTAATCTTATTACGTTCATTGGAGCCTGTCCAGAATCCTGGACTCTTGTGTATGAGTATTTACCCAATGGAAGTCTTGAAGATCGGCTCAGTTGCAAGGATAATACACCCCCATTGTCATGGCAAACCAGAATTCGCATTGCTGTGGAGCTCTGCTCTGCTCTCATTTTTCTTCATGCCAGTAAATCTCATAGCATAGTGCACGGTGACTTAAAACCCTCCAATATTCTCCTTGATGCTAACCTTGTGAGCAAGCTTAGCGACTTTGGAATCTGTCGGATATTATCTCGTCATGAGAGTTCAAGTAACAATTCTACAGAATTATGGAGAACTGACCCCAAGGGCACTTTTGTCTACATGGATCCTGAATTCCTTGCTTCTGGGGAGCTTACACCAAAGTCAGATATATATTCATTTGGAATCATATTATTAAGATTGTTGACTGGGAGACCAGCCTTCGGAATAAGACAGGAAGTAAAGTATGCATTAGATGCTGGAAAGTTGAAATCCCTCTTGGATCCTTTGGCTGGAGACTGGCCATTTGTACAGGCTGAACAGCTGTGTCGCTTGGCATTGAGATGTTGTGAGACAAACCGAAAGAGCCGGCCAGACCTCTATTCAGATGTCTGGAGGATTCTGGAACCGATGAGAGCTTCTTCTGGAGGCACAATTGCCTTCAGACTGGGTTCTGAAGGCCTTTACCAACCCCCTTCATATTTCATTTGTCCAATCTTCCAGGAAGTCATGCAAGATCCGCAAGTTGCTGCTGATGGTTTTACTTACGAAGCTGAGGCTATACGAGGATGGCTGGACGGTGGTCATGAGACTTCACCAATGACAAACGATAAGCTTGCGCATCACAAACTTGTTCCCAACCATGCTCTTCGCTCTGCAATCCAGGACTGGCTTCAGAATAATTGA 2601 0.4306 MGEVVEEPNPGVVEEKIYVAVSKEVKECKLNLIWAIQNSGGKKICILHVYVPSTMIPMLGTKFPASALQDQEVEAYREIERQNMHKSLNEYLLICQRMGVRAEKLYIEMDCIEKGIVELVSQYSIRKLVMGAASDKSHSRKMMDLRSKKAIYVREHATASCHIQFICKGHLIHTRGCSLDKGNVEATSSPVPQRGLYPDAGRSLYLRSQSVELGHNHWVRLTNPAQDLIRRVRSANAEHQGSIATVSSPDGTEGLSTPRIRLSTEVSSDESEGLSRRSLSVFSTFSDSGAIEAPSTPDLITKQNEIVLDSSELSLINADLCHSSPPSVLDGGMDYSLYDQLEQAMGEAENARQDKYQETIRRGKAEREAIDAIRRAKASEILYREEMKLRIEIEEALEKAKEELGQMKSQRDKVNEELQLALDQKSSIESQIALTELMKKELEQKIISAVDLLQSYKKERDELQMQRDNALREAEELKKKPAEASSTHVPQFFLEFSFPEIEEATNNFNLSLKIGEGGYGSIYKGILRHTEVAIKILHPYSLQGPSEFQQEVDVLSKLRHPNLITFIGACPESWTLVYEYLPNGSLEDRLSCKDNTPPLSWQTRIRIAVELCSALIFLHASKSHSIVHGDLKPSNILLDANLVSKLSDFGICRILSRHESSSNNSTELWRTDPKGTFVYMDPEFLASGELTPKSDIYSFGIILLRLLTGRPAFGIRQEVKYALDAGKLKSLLDPLAGDWPFVQAEQLCRLALRCCETNRKSRPDLYSDVWRILEPMRASSGGTIAFRLGSEGLYQPPSYFICPIFQEVMQDPQVAADGFTYEAEAIRGWLDGGHETSPMTNDKLAHHKLVPNHALRSAIQDWLQNN 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1082 866 SUPERFAMILY RING/U-box 791 865 - -
Dere11g1082 866 ProSiteProfiles U-box domain profile. 795 866 IPR003613 GO:0004842|GO:0016567
Dere11g1082 866 SMART serkin_6 508 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere11g1082 866 ProSitePatterns Protein kinases ATP-binding region signature. 514 535 IPR017441 GO:0005524
Dere11g1082 866 Gene3D Transferase(Phosphotransferase) domain 1 581 783 - -
Dere11g1082 866 Pfam U-box domain 797 866 IPR003613 GO:0004842|GO:0016567
Dere11g1082 866 SUPERFAMILY Protein kinase-like (PK-like) 485 765 IPR011009 -
Dere11g1082 866 Gene3D Phosphorylase Kinase; domain 1 493 580 - -
Dere11g1082 866 CDD RING-Ubox_WDSUB1-like 797 852 - -
Dere11g1082 866 ProSitePatterns Serine/Threonine protein kinases active-site signature. 626 638 IPR008271 GO:0004672|GO:0006468
Dere11g1082 866 MobiDBLite consensus disorder prediction 239 258 - -
Dere11g1082 866 Coils Coil 338 358 - -
Dere11g1082 866 CDD STKc_IRAK 514 776 - -
Dere11g1082 866 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 795 866 IPR013083 -
Dere11g1082 866 CDD STK_N 16 169 - -
Dere11g1082 866 FunFam receptor-like protein kinase FERONIA 471 580 - -
Dere11g1082 866 Coils Coil 383 480 - -
Dere11g1082 866 SMART Ubox_2 799 862 IPR003613 GO:0004842|GO:0016567
Dere11g1082 866 PANTHER OS02G0152300 PROTEIN 17 861 - -
Dere11g1082 866 ProSiteProfiles Protein kinase domain profile. 508 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere11g1082 866 Pfam Protein kinase domain 511 763 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1082 Dere-ChrDere11 21317732 21323493 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1082 4 866 U-box Gene Family AT2G45910 54.114 0.0 921
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Dere11g1082 Pkinase 1.3e-43 CL0016