Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1059 ATGGATCGAGGGGACCATATGGCGTTATCTGGGTCTGCATCTTACTATATGCAGCGAGGACTAGCTGGTGCTGGAGCACAACCTGAGTTACACGGTTCACCGGGTATTCGTCCCCTGTCGAATCCCAATCTACCATTTCAACCCAGCATTGGAGGTGGTGGTCCCATTGGATCCTCATTACCCTTAGAATCTTCGGCAATTTCACCTCACGGTGTTAATGTGGGTGTTCCTCCCGGGGCACCACCTGGGGAACCAGTCAAACGGAAGAGAGGAAGGCCTAGGAAATATGGCCCTGATGGAAGTGTATCATTGGCATTGACTCCATCATCGTCTAGTCAACTCGGCGGAGCGTTGACACCTGGCCAAAAGAGGGGTAGAGGCCGCCCTCCAGGGAGTGGAAAGAAACAGCAGTTGGCCTCGCTTGGTGAATTGATGTCTGGTTCTGCTGGGATGGGTTTCACTCCTCATATAATCACCATTGCAGTTGGAGAGGACATTGCAACAAAAATAATGGCATTTTCTCAGCAGGGGCCTAGAGCTGTATGCATTTTGTCAGCAAATGGTGCTGTCTCTAATGTGACGCTTCGACAGCCTTCAAGTTCGGGTGGCACTGTCACATATGAGGGGCGTTTTGAGATATTGTGCCTATCAGGCTCTTACTTGCTAACTGAAAGTGGTGGCTCTCGCAATCGAACTGGTGGTCTAAGTGTTTCGCTTGCTAGTCCCGATGGTCGTGTCATTGGTGGAGGAGTTGGTGGATTGCTGATTGCAGCAAGTCCTGTTCAGGTGATAGTTGGGAGCTTTATCTGGGGCGGATCAAGGACAAAGAGCAAGAAGAAGGAAGGTGCAGAAGAAGCAGAAGTTGCTGTGGAATCTGATCATCATCAAGCAGTTCACAATCCAGCTGCATTGAACAGCATTTCGCCAAATCAAAATCTTACTCAGGCTTCATCTATGAGTCCCTGGCCTGCTTCTCGCCAATTGGATATGCGTAATTCCCATGTTGACATTGATCTAATGCGTGGGTGA 1029 0.4966 MDRGDHMALSGSASYYMQRGLAGAGAQPELHGSPGIRPLSNPNLPFQPSIGGGGPIGSSLPLESSAISPHGVNVGVPPGAPPGEPVKRKRGRPRKYGPDGSVSLALTPSSSSQLGGALTPGQKRGRGRPPGSGKKQQLASLGELMSGSAGMGFTPHIITIAVGEDIATKIMAFSQQGPRAVCILSANGAVSNVTLRQPSSSGGTVTYEGRFEILCLSGSYLLTESGGSRNRTGGLSVSLASPDGRVIGGGVGGLLIAASPVQVIVGSFIWGGSRTKSKKKEGAEEAEVAVESDHHQAVHNPAALNSISPNQNLTQASSMSPWPASRQLDMRNSHVDIDLMRG 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1059 342 Gene3D - 155 297 - -
Dere11g1059 342 SMART AT_hook_2 123 135 IPR017956 GO:0003677
Dere11g1059 342 SMART AT_hook_2 87 99 IPR017956 GO:0003677
Dere11g1059 342 MobiDBLite consensus disorder prediction 103 118 - -
Dere11g1059 342 FunFam AT-hook motif nuclear-localized protein 1-like 155 286 - -
Dere11g1059 342 Pfam Plants and Prokaryotes Conserved (PCC) domain 155 268 IPR005175 -
Dere11g1059 342 MobiDBLite consensus disorder prediction 24 136 - -
Dere11g1059 342 CDD DUF296 154 268 IPR005175 -
Dere11g1059 342 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 71 318 IPR039605 GO:0003680
Dere11g1059 342 MobiDBLite consensus disorder prediction 304 325 - -
Dere11g1059 342 SUPERFAMILY AF0104/ALDC/Ptd012-like 153 271 - -
Dere11g1059 342 ProSiteProfiles PPC domain profile profile. 149 289 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1059 Dere-ChrDere11 20338832 20343804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1059 1 342 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 52.210 7.19e-91 274