Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1042 ATGGGTAGAACCCCATGCTGCGACAAGAAGGGTTTGAAGAAAGGGCCATGGACAGCTGAAGAGGACGAGATTCTTGTTGATTACATCAAGAAGAATGGTGGCCATGGAAGCTGGCGTTCTCTCCCAAAGTTGGCAGGTCTGCTTCGGTGTGGGAAGAGTTGCAGGCTAAGGTGGACGAACTATCTAAGGCCTGATATAAAACGGGGTCCCTTTACACTTGAGGAAGAGAAGCTTGTCATACAGCTTCATGGCATTCTTGGAAATAGGTGGGCTGCTATAGCCTCGCAGTTACCAGGAAGAACAGACAATGAGATAAAGAATCTATGGAACACCCACCTGAAGAAGCGACTCATATGCATGGGACTCGACCCCCAAACCCACAAGCCAGTGTCCTCATCATCAAACTACCCTAACAATCCCAAAGCAGAAGCAGCATCAGTCTCCACTCGTCACATGGCCCAGTGGGAGAGTGCGAGGCTCGAAGCAGAAGCCAGGCTTTCCAGAGAGACCTCTCTCTTCAACCCTCCCTCCATCGCTGTCGTGAAGCCTCCCGACGACTCCGACTTCTTCCTCCGATTATGGAACTCCGAGGTCGGAGACGCATTTCGCAACATGATGCAGCAGCACAAGAAACTAGATGAATCCGCGTGTCAGAACCCTGTTTCTTCTCCTGGGTCGTCTTCTTCCACCAAGTGTACTACTGGGTCGGTCTCTGCTATCACTGCAGAAGTTCCAGCCATTGATGAAGGTGCAGTAATGGCTGGGTCTGACGATTCTTCTATCTCTAATGAGTTGGAAGACTCATCAGACACTGCCTTGCAGCTCTTGTTGGATTTTCCTATATATAATGACATGAGCTTCTTAGAAGGAAACTCTTTTATTTCTCCCCTTTAG 894 0.4933 MGRTPCCDKKGLKKGPWTAEEDEILVDYIKKNGGHGSWRSLPKLAGLLRCGKSCRLRWTNYLRPDIKRGPFTLEEEKLVIQLHGILGNRWAAIASQLPGRTDNEIKNLWNTHLKKRLICMGLDPQTHKPVSSSSNYPNNPKAEAASVSTRHMAQWESARLEAEARLSRETSLFNPPSIAVVKPPDDSDFFLRLWNSEVGDAFRNMMQQHKKLDESACQNPVSSPGSSSSTKCTTGSVSAITAEVPAIDEGAVMAGSDDSSISNELEDSSDTALQLLLDFPIYNDMSFLEGNSFISPL 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1042 297 SMART sant 13 64 IPR001005 -
Dere11g1042 297 SMART sant 67 115 IPR001005 -
Dere11g1042 297 FunFam MYB transcription factor 70 117 - -
Dere11g1042 297 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Dere11g1042 297 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Dere11g1042 297 MobiDBLite consensus disorder prediction 213 234 - -
Dere11g1042 297 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 258 - -
Dere11g1042 297 Gene3D - 11 68 - -
Dere11g1042 297 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Dere11g1042 297 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Dere11g1042 297 CDD SANT 16 62 IPR001005 -
Dere11g1042 297 Gene3D - 70 117 - -
Dere11g1042 297 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Dere11g1042 297 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Dere11g1042 297 CDD SANT 70 113 IPR001005 -
Dere11g1042 297 FunFam Myb transcription factor 11 68 - -
Dere11g1042 297 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1042 Dere-ChrDere11 20070825 20073910 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1042 1 291 MYB Transcription Factor Family AT3G61250 66.554 1.28e-126 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere11g1042 Myb_DNA-binding 9.7e-14 CL0123