Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1039 ATGTCGTTCACTGGAACTTTGGATAAATGCAAGGCTTGTGATAAGACTGTTCATGTGGTGGACATGATGACTCTTGAAGGTACTCCTTACCATAAATCCTGCTTCAAGTGCAGCCACTGCAAGGGATTTCTTTCGATGAGCAGCTACTCTTGGATGGATGGTGTCCTCTACTGCAAACCACATTTTGAGCAGCTTTTCAAGGAATCTGGCAATTTCAGCAAGAACTTTCAGACAGGAAAGTCTTCTGAGAAGAATGATCTGTCCAGGACTTCAAGCAAGCTCTCTTCCATGTTCAGTGGAACCCAAGACAAGTGCTCTGTTTGTGGAAAAACAGTCTATCCTCTGGAAAAGATGACACTGGAAGGTGAGTGCTTCCACAAGTCATGCTTCAGGTGTGCTCATGCAGGGTGCCCACTGACCCACTCCTCCTATGCTGCCCTTGATGGAGTCCTCTACTGCAGGCACCACTTTGCCCAGCTCTTCATGGAGAAGGGCAATTACAACCATGTCCTCCAGGCAGCTGCTCACAAGAGGAGTGCCAGCGCTGGCACTCCTCCGCCTGAGCCGGCCACCGAAGAGGATGAGGAGAAGCCTGAGGACTCGCCTAAGGTGGTGCAGGACGATGAGGAGGAGGACAAGAAGCCCAAAGATGATGATGATGCAGAGCAATCTTAG 675 0.4993 MSFTGTLDKCKACDKTVHVVDMMTLEGTPYHKSCFKCSHCKGFLSMSSYSWMDGVLYCKPHFEQLFKESGNFSKNFQTGKSSEKNDLSRTSSKLSSMFSGTQDKCSVCGKTVYPLEKMTLEGECFHKSCFRCAHAGCPLTHSSYAALDGVLYCRHHFAQLFMEKGNYNHVLQAAAHKRSASAGTPPPEPATEEDEEKPEDSPKVVQDDEEEDKKPKDDDDAEQS 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1039 224 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Dere11g1039 224 PANTHER OS06G0237300 PROTEIN 6 81 - -
Dere11g1039 224 ProSiteProfiles LIM domain profile. 103 163 IPR001781 -
Dere11g1039 224 FunFam LIM domain and actin-binding 1 99 169 - -
Dere11g1039 224 MobiDBLite consensus disorder prediction 196 224 - -
Dere11g1039 224 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Dere11g1039 224 Pfam LIM domain 10 65 IPR001781 -
Dere11g1039 224 Pfam LIM domain 105 160 IPR001781 -
Dere11g1039 224 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 131 170 - -
Dere11g1039 224 FunFam LIM domain and actin-binding 1 4 74 - -
Dere11g1039 224 MobiDBLite consensus disorder prediction 176 224 - -
Dere11g1039 224 CDD LIM1_SF3 6 68 - -
Dere11g1039 224 SMART lim_4 9 61 IPR001781 -
Dere11g1039 224 SMART lim_4 104 156 IPR001781 -
Dere11g1039 224 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Dere11g1039 224 MobiDBLite consensus disorder prediction 76 102 - -
Dere11g1039 224 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Dere11g1039 224 Gene3D Cysteine Rich Protein 6 74 - -
Dere11g1039 224 Gene3D Cysteine Rich Protein 99 169 - -
Dere11g1039 224 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 97 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1039 Dere-ChrDere11 20052646 20055227 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Dere11g1039 LIM 1.7e-10 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere11g1039 11 20052646 20055227 Dere11g1039 11 20052646 20055227 ECH