Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1028 ATGACTTTTGGTATCGTTCTTTATGGGTCTGATTTGGTTGGTCGGGCTTGCACTGGGCAGGGTAAAACTCTTGCCTTTGTGTTGTCTATATTGGAGTCCTTAACAAATGGTCCAGCAAAAGCAGTGAGAAAGACTGGATATAGAAGGTCTCCAAGTGTTCTTGTGCTTTTACCTACTCGAGAGTTAGCCAATCAAGTGTATGCTGATTTTGAAGTTTATGGTGGGGCACTGGGATTGGCTTCTTGCTGTTTATATGGTGGTGCTTCATATCAAGCTCAAGAAACTAATCTCAAGAGAGGCGTTGATATTGTTGTTGAAACTCCAGGACGCATAAAAGATCATATAGAGAGGGAAAATATTGACCTGAGCCAACTAAAGTTTCGCGTCCTTGATGAGGCAGATGAGATGCTGAGGATGGGTTTTGTTGAAGATGTTGAACTCATTCTGGATAAGAAAACTGCTGATCTGGTTGGCAATGAGAAAATGAAAGTTAGCACCAACGTTAGGCATATTGTTCTCCCATGTTCTCGTTCTGCCCGGTCCCAGCTTATTCCAGATGTTATATGCTGCTATAGCAATGAAGGCCGAACAATTATATTCACTGAGACAAAAGAGTCTGCTTTTGAGCTTGCAGGGTTGTTGCCTGGTGCACGAGCTCTGCATAATGATATACAGCAGGCACAGCGTGAGTGTGAGCCCCCACGTGATGTAGAAGCCTATATCCATCGATCTGGGCACGTGGAAGAGCAAGAAAAGGGAGAAAGAGTAAGATCTTCCTAA 780 0.4372 MTFGIVLYGSDLVGRACTGQGKTLAFVLSILESLTNGPAKAVRKTGYRRSPSVLVLLPTRELANQVYADFEVYGGALGLASCCLYGGASYQAQETNLKRGVDIVVETPGRIKDHIERENIDLSQLKFRVLDEADEMLRMGFVEDVELILDKKTADLVGNEKMKVSTNVRHIVLPCSRSARSQLIPDVICCYSNEGRTIIFTETKESAFELAGLLPGARALHNDIQQAQRECEPPRDVEAYIHRSGHVEEQEKGERVRSS 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1028 259 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 3 222 IPR014001 -
Dere11g1028 259 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 122 246 IPR027417 -
Dere11g1028 259 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 129 137 IPR000629 -
Dere11g1028 259 SMART ultradead3 1 199 IPR014001 -
Dere11g1028 259 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 6 150 - -
Dere11g1028 259 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 152 IPR027417 -
Dere11g1028 259 CDD DEADc 2 151 - -
Dere11g1028 259 Gene3D - 1 208 IPR027417 -
Dere11g1028 259 Pfam DEAD/DEAH box helicase 5 152 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1028 Dere-ChrDere11 19835770 19836747 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1028 4 145 Eukaryotic Initiation Factors Gene Family AT3G13920 36.111 4.00e-18 81.3