Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1027 ATGATTAAGAGCAATTGGTGGAATATTAACGACAGCTGCTACAACTTCTCAAAGCGTTGTGAATGGCCTGGGATAGGGTGCAATGAGTTTGGCAGTATTATTGCGATTTGGAGACCAAGCCTCCCCATAAGGCAACCTCGTCTTGGAGATCTTAACTTCACTGCATTTCCCAATCTTGTACGTCTAAATCTTGGTGGAATGGGGCTGACAGGTACAATTCCAACTCATATAGGAAATCTTAAAAGGCTCACTTATCTGGACTTGTCCTATAACTTTCTTGTTGGTGAGTTGCCTTCCACTCTCGGAAACCTCACTCAACTTGTAGATGTTGATGTTTCTTACAATTCTATTAGCGGAGTAATTCCTAGTTGGTTGAGCCATTTGGAGAACCTTGTTAGGCTAAGTTTGCAAGGCAACAATTTCCATGGATCCATTCCTCCATCGTTGGGTCAGATGAGCAATCTCAGAAATATGGAGCTTTCCAATAATAAACTTTCAGGCGAGTTACCTACCACACTTACAAATCTTACTCAACTTGAAATATTAGGCTTGAATGCAAACAAATTCTCTTCAGCCATTCCTTCAATTTTGGGCTTTATAACCAATCTCACCTATCTGAATTTGTCCTCAAATATGTTCACTGGTGAGATCCCTTCTTCAATTTTAAATTTGACAAAGTTGAAAGAGTTTGATGTTTCCCAAAATCAAATCAGTGGTTTCATACCCCAACAAATTGGGAAACTAACAAATTTAATCACTTTAGATTTGAGTTCCAACCATATTTCTGGTCCTATTCCTATGTCATTGTATGAACTAACTTATTTGACTAATATTTTCCTTCAGTCAAATCAAATAAGTGGTTTCATAAATCCTTTAATTGGTAAGTCAAAGTGTCTGAGAAGACTAGATCTATCAAATAACAAGATATATGGTCATATACCACAAGAGATAGCAGAACTCTATCTTCATGAAACACTAGACCTCTCGCGAAATGAGCTAAATGGAACTGTGCCCTACCTTCAGAATTGTTTGGTCATTAACTTTAGCCACAACAAGATCAGTGGAGAGTTACCATCTAACATATCTTCATTTCCACAGATGTGTCAGTTGGATTTGAGCTATAATAATATCACTGGAAATATACCTAGAGAACTAGGTCAGTTGAAATACATCAACTTATCATACAATTTTCTCAGTGGTCATGTCCCAATTGAAGTTTATTGTTCATTTCCACATGATATATTTTACGGTAATAAAGAGTTACATGGTCAAGAGATGAACTTTTTATGTTCTACCTCTACCCATGCAAAAAAAGCAAAGCATTACATGGAGATCATTCCTCCGATCACAATTTTCTTTGGAATCATCTTTGTTGGGGCATTGATCCTTTATCAGCATTCAAAAAGGAGAATAACAATTGAGAGAAAAGCAATACGGAATGGAGACTTGTTTTCAATATGGAATTTTGATGGTAAAATTGCTTATAGAGATATCATTAAAGCTACTGAGGACTTTGATTTCAAGTATTGTATTGGAACTGGGGCCTATGGAAGTGTTTACAAGGCACAACTTCCGAGTGGCAAGATTGTGGCATTGAAAAAACTTCATAGAAGAGAATCTCATGACTCATCATTTGCTAAGAGTTTTCACAATGAAGTGAAAATGTTGACTGAAATCCGACACCGCAACATCGTAAAACTTCATGGTTCTTGTTTCCACAATCAATGCACGCTTCTTATCTATGAGTACATGGAAAGAGGAAGCCTTTTTTATGTCTTGAGCAATGATGATGATGCTAAGGAGTTGATTTGGAGCAAAAGGGTGAATGCCATTAAAGGAATAGCAAATGCTTTGTCCTACATGCATCATGATTGTACTCCTGCAATTATTCATCGTGACGTAACAAGTAGCAATGTTTTATTGAACTCAAATATGGAAGCTTTTGTCTCAGACTTTGGCACAGCTAGAATCCTCGATCCCGATTCCTCCAATCAAACTCTTCCAGTTGGCACTTACGGTTATGTTGCTCCAGAACTTGCATATACCTTGGTGGTGACTGAAAAATGTGATGTTTATAGTTTTGGAGTGGTGGCATTAGAAACAATCACAGGGAGACACCCTGGAGAGTTAATCTCATCTTTGTCAGAGACTTGTACTGAGAGCATCTTGTTAAAAGATGTCTTAGACTCACGTCTCCCTCTTCCTTTGCAGAAAGACGAACAAGCAGTGGTTTTTGTAATCACAATAGCACTAGCATGCTTGCATCGTACACCAAATTCACGACCATCAATGAAGAAGGTTGCGCAAGAGCTTTCAGTCTCCAAGCCACCATTTCGTGTTTCGCTAAATGATATTTCACTCCAACATCTAATGAATCAAGATATATGTGTTTGA 2394 0.378 MIKSNWWNINDSCYNFSKRCEWPGIGCNEFGSIIAIWRPSLPIRQPRLGDLNFTAFPNLVRLNLGGMGLTGTIPTHIGNLKRLTYLDLSYNFLVGELPSTLGNLTQLVDVDVSYNSISGVIPSWLSHLENLVRLSLQGNNFHGSIPPSLGQMSNLRNMELSNNKLSGELPTTLTNLTQLEILGLNANKFSSAIPSILGFITNLTYLNLSSNMFTGEIPSSILNLTKLKEFDVSQNQISGFIPQQIGKLTNLITLDLSSNHISGPIPMSLYELTYLTNIFLQSNQISGFINPLIGKSKCLRRLDLSNNKIYGHIPQEIAELYLHETLDLSRNELNGTVPYLQNCLVINFSHNKISGELPSNISSFPQMCQLDLSYNNITGNIPRELGQLKYINLSYNFLSGHVPIEVYCSFPHDIFYGNKELHGQEMNFLCSTSTHAKKAKHYMEIIPPITIFFGIIFVGALILYQHSKRRITIERKAIRNGDLFSIWNFDGKIAYRDIIKATEDFDFKYCIGTGAYGSVYKAQLPSGKIVALKKLHRRESHDSSFAKSFHNEVKMLTEIRHRNIVKLHGSCFHNQCTLLIYEYMERGSLFYVLSNDDDAKELIWSKRVNAIKGIANALSYMHHDCTPAIIHRDVTSSNVLLNSNMEAFVSDFGTARILDPDSSNQTLPVGTYGYVAPELAYTLVVTEKCDVYSFGVVALETITGRHPGELISSLSETCTESILLKDVLDSRLPLPLQKDEQAVVFVITIALACLHRTPNSRPSMKKVAQELSVSKPPFRVSLNDISLQHLMNQDICV 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1027 797 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 187 772 - -
Dere11g1027 797 FunFam Nuclear pore complex protein NUP107 2 146 - -
Dere11g1027 797 Pfam Leucine rich repeat 201 261 IPR001611 GO:0005515
Dere11g1027 797 SUPERFAMILY RNI-like 61 409 - -
Dere11g1027 797 SMART LRR_sd22_2 152 178 - -
Dere11g1027 797 SMART LRR_sd22_2 272 290 - -
Dere11g1027 797 SMART LRR_sd22_2 296 319 - -
Dere11g1027 797 SMART LRR_sd22_2 248 263 - -
Dere11g1027 797 SMART LRR_sd22_2 224 239 - -
Dere11g1027 797 SMART LRR_sd22_2 80 106 - -
Dere11g1027 797 ProSiteProfiles Protein kinase domain profile. 505 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere11g1027 797 Gene3D Ribonuclease Inhibitor 2 171 IPR032675 -
Dere11g1027 797 FunFam MDIS1-interacting receptor like kinase 2 584 777 - -
Dere11g1027 797 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 164 434 - -
Dere11g1027 797 Pfam Leucine Rich Repeat 82 104 IPR001611 GO:0005515
Dere11g1027 797 SUPERFAMILY Protein kinase-like (PK-like) 487 771 IPR011009 -
Dere11g1027 797 Pfam Protein kinase domain 510 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere11g1027 797 ProSitePatterns Protein kinases ATP-binding region signature. 511 533 IPR017441 GO:0005524
Dere11g1027 797 FunFam Leucine-rich repeat receptor protein kinase MSP1 467 583 - -
Dere11g1027 797 SMART LRR_typ_2 128 152 IPR003591 -
Dere11g1027 797 SMART LRR_typ_2 364 388 IPR003591 -
Dere11g1027 797 SMART LRR_typ_2 80 104 IPR003591 -
Dere11g1027 797 SMART LRR_typ_2 200 224 IPR003591 -
Dere11g1027 797 SMART LRR_typ_2 176 199 IPR003591 -
Dere11g1027 797 SMART LRR_typ_2 248 272 IPR003591 -
Dere11g1027 797 ProSitePatterns Tyrosine protein kinases specific active-site signature. 629 641 IPR008266 GO:0004672|GO:0006468
Dere11g1027 797 Gene3D Transferase(Phosphotransferase) domain 1 584 780 - -
Dere11g1027 797 Gene3D Phosphorylase Kinase; domain 1 468 583 - -
Dere11g1027 797 Gene3D Ribonuclease Inhibitor 172 439 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1027 Dere-ChrDere11 19823361 19825843 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1027 56 677 Receptor kinase-like Gene Family AT4G08850 38.128 6.81e-141 439
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Dere11g1027 Pkinase 5.1e-45 CL0016