Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g0998 ATGGCAAGCCAGGAAGAGATCGATCAGTTGCCAACATACATGGTGCGGAGGGTTGATGGTCAACAAGAAGGTGATATACCGCCCGGAGAACGTGTTCTTTTCCAAGAAGATGCAGAATGCTGTATCTGCCTTTCAGACTACGATGATGGTGAACAACTAAGAGAACTTCCTTGTAACCACCATTTCCACAGCAACTGCATAAGCCATTGGTTGAGCACAAACCCTACCTGCCCTCTCTGCAAGTTCGACATTTCCAGCACCGAAGACAACAATCAACAAGACGACAATCAAGAAGGCGACAATCAACAAGACGACAATCAAGAAGGCGACAATCAACAGGACGACAATCAAGAATAAATGGCAAGCCGAGAAGAGATTGATCAGTTGCCGAAATACAGGTTTGAGAGGAATTATGATGATGAAGGACCTTACAGAGGAGTAATGCGGCGATTTACTATTCATGTCATCGAATATAAACTTCACGCGGAAGACGCACGTTGTTGTATTTGCTCTTCTGCCTACCATGATGAAGATGAACTAAGAGAACTTCCTTGTGGACACCATTTCCACCGCCTCTGCATAGACGAGTGGTTGCGCGTAAACCCTACTTGCCCTCTCTGCAGATTCAACATTTTGGACTAA 642 0.4533 MASQEEIDQLPTYMVRRVDGQQEGDIPPGERVLFQEDAECCICLSDYDDGEQLRELPCNHHFHSNCISHWLSTNPTCPLCKFDISSTEDNNQQDDNQEGDNQQDDNQEGDNQQDDNQEXMASREEIDQLPKYRFERNYDDEGPYRGVMRRFTIHVIEYKLHAEDARCCICSSAYHDEDELRELPCGHHFHRLCIDEWLRVNPTCPLCRFNILD 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g0998 213 ProSiteProfiles Zinc finger RING-type profile. 167 208 IPR001841 -
Dere11g0998 213 SUPERFAMILY RING/U-box 31 87 - -
Dere11g0998 213 SUPERFAMILY RING/U-box 145 211 - -
Dere11g0998 213 MobiDBLite consensus disorder prediction 93 112 - -
Dere11g0998 213 SMART ring_2 167 207 IPR001841 -
Dere11g0998 213 SMART ring_2 40 80 IPR001841 -
Dere11g0998 213 SMART FANCL_C_2 36 89 - -
Dere11g0998 213 Pfam Ring finger domain 39 81 IPR001841 -
Dere11g0998 213 Pfam Ring finger domain 166 208 IPR001841 -
Dere11g0998 213 MobiDBLite consensus disorder prediction 84 126 - -
Dere11g0998 213 ProSiteProfiles Zinc finger RING-type profile. 40 81 IPR001841 -
Dere11g0998 213 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 92 IPR013083 -
Dere11g0998 213 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 213 IPR013083 -
Dere11g0998 213 PANTHER TARGET OF ERK KINASE MPK-1 2 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g0998 Dere-ChrDere11 19233740 19239283 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g0998 2 84 C3H Transcription Factor Family AT1G68070 47.423 1.48e-23 94.4