Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g0996 ATGTCAAACCCATCACCTTCTTCTCCAACCGACGCCGCCATGGACAGCTCCCCGCTTCTCAGTCACTCCATCTCCGACCACCTCCTACGGAGCCGCCGTTTCATCCACCGCACTCCGCCGCCTCTGCGAACCGCCGCACGGTTCTTCCGCCGCGCTAGCGGCCGCCGCATGATGCTCCGGGAGCCGTCGGTGAGGGTCCGTGAGAACGCGGCGGAGCAGCTAGAGGAGCGCCAGAGCGATTGGGCGTACTCGAAGCCGGTAATCATATTGGATATATTGTGGAACTTAGCATTTGCGGCTATTGCGATTACCGTATTGGGAATGAGTACGGAGGAAAAGCCATGTGTGCCTTTAAGGGTGTGGATAGTGGGGTACTTGCTGCAGGGTTTGCTTCATTCTCTGTGTGTGATCGTGGAATACAGGAAGCGTAGCCGAGCGGGTTCGACGATGTTGGAACAGAATAATAATAGGGGTTGGGAGAGTGTTGGAGATCCAAATTATAGTTCTGGGAGTGATGGAGAGGATTCTGCTGCAGAGCATCTTCAGGAGGGTGATGCAAGCAGCTTCATGAAGCACGCAGAGTCTGCAAATACCATGCTTTCATTCATTTGGTGGATTATTGGATTCTATTGGATAACTGCTGGTGGTCAGAGCTTGATCCAGGATTCACCTCAGCTTTACTGGCTTTGTATTACATTTCTTGCTTTCGACATTGTGATTGTATTGATCTGCGTTGCCGTTGCATGTCTTATTGGTGTTGCTGTTTGCTGCTGTCTGCCATGCATTCTTGCTATTTTGTATGTGGTGGCAGATCAGGAAGGGGCAACCGAAGAAGAGATTGATCTGTTGCCAAAATACAAGTTCCGGAGGATTGATGGATTAAGGAAAGTTGATGGTGATATTCAAGAATCTTCCAGAGGAATAATGACAGAATGTGATAGTGATACACCCGCAGAACATGTACTTTCCTTGGAAGATGCAGAATGCTGTATCTGCCTTTCTGCCTACGACGATGGTGCAGAACTTAGAGAACTTCCTTGTAAGCACCATTTCCACTGCGCTTGCATAGATAAGTGGTTGCACATAAATGCTACCTGCCCTCTCTGCAAGTTCTACATTTTGAGGACAGAAAATGGCCATCAAGAAGTTTGA 1152 0.4913 MSNPSPSSPTDAAMDSSPLLSHSISDHLLRSRRFIHRTPPPLRTAARFFRRASGRRMMLREPSVRVRENAAEQLEERQSDWAYSKPVIILDILWNLAFAAIAITVLGMSTEEKPCVPLRVWIVGYLLQGLLHSLCVIVEYRKRSRAGSTMLEQNNNRGWESVGDPNYSSGSDGEDSAAEHLQEGDASSFMKHAESANTMLSFIWWIIGFYWITAGGQSLIQDSPQLYWLCITFLAFDIVIVLICVAVACLIGVAVCCCLPCILAILYVVADQEGATEEEIDLLPKYKFRRIDGLRKVDGDIQESSRGIMTECDSDTPAEHVLSLEDAECCICLSAYDDGAELRELPCKHHFHCACIDKWLHINATCPLCKFYILRTENGHQEV 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g0996 383 MobiDBLite consensus disorder prediction 155 177 - -
Dere11g0996 383 CDD RING-H2_RNF6-like 328 370 - -
Dere11g0996 383 Pfam Ring finger domain 328 370 IPR001841 -
Dere11g0996 383 PANTHER TARGET OF ERK KINASE MPK-1 52 377 - -
Dere11g0996 383 MobiDBLite consensus disorder prediction 155 175 - -
Dere11g0996 383 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 308 378 IPR013083 -
Dere11g0996 383 ProSiteProfiles Zinc finger RING-type profile. 329 370 IPR001841 -
Dere11g0996 383 FunFam E3 ubiquitin-protein ligase At1g12760 315 380 - -
Dere11g0996 383 SUPERFAMILY RING/U-box 320 375 - -
Dere11g0996 383 SMART ring_2 329 369 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g0996 Dere-ChrDere11 19209069 19214770 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g0996 1 375 C3H Transcription Factor Family AT1G68070 46.982 4.78e-112 329