Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g0990 ATGGGTACAAAAACAGCCAGAAGAACTGAAGCTCTTTATGCGCAAACTTGTGCATATTGGCTTGCGGGGCGATGCACCAGAAAACATTGTAGGTTTTTGCACAGTGAAACCCCAACTCGTCAATATGAGACTACTCCATATCATTGTGGGAGGCAGTCCCGTTACTTTGCTGAGAAGACCCCAAAATACAATCCAAATAATGAATCAATCAAAAAGAGTGGAGAAGATGGGACAAGCTCCTCCAAGGCTACTAAGAAGTTGTCATTGAGTGTTTGTAGATACTGGATGAATGGCAATTGCACACATGGTGATCAGTGCTGGAACTTGCATTCTTGGTTTCACGGCGAGGGATTTTCAACGCTTGCTAAACTACATGAACATAAGAAGACTTTGTTAAAATTCGGGAAACAGATGGTCACAGGAATTGCAGTTCCAGATGGATCAGACAAACTTTTCTCCGGCAGCACTGACGGGACAGTGCGGATATGGGACTGCCATTCTGGTCGATGCATTCACATGATGAATCTTGGTGGCGAAGTTAGGTCTTTGATCAGTGAGGGTCCGTGGGTTTTTGTTGGTTTACCGAATGCTATTAAGGCTTGGAACATTAACACTGCTGCTGAGCTTACTCTTGATGGACCTAAGGGGCAAGTCCTCGCCATGGTTGTTGGCCATGATACTGTTTTTGCTGGAGCAAAGGATGGTGTTATATATGCTTGGAGAGGGAGTTCTGGAACGAATTCTCCATTTGAACCGGTGGCAGCACTTAACGGCCATACTAGAGCTGTTTTTTGCTTAACTGTTGGACGCGATAAGTTGTACTCAGGTTCCATGGACTATAGCATAAAGGTCTGGGACCTTGACACATTAGAGTGTACTATGACACTGAACGAGCATACTGATGTGGTGACGTCCCTTATTTGTTGGGATCAATATTTGTTATCAAGTTCATTGGACAACACTGTTAAGATTTGGGCTATGAATGAAGTGGGAACTTTGGAAGTAATATATACGCACAATGAAGAACATGGTGTTGTAGCACTTGGCGGGATGACTGATTTGGAAGAAAAACCTATTTTGTTTTGCTCTACCAGTGACCATTCTGTTGGGCTATATGAATTGCCATCATTTTCTCGAAGGGGCCTATTATTCTCCAAACAAGAAGTTCAAGCAATTCAAGTGGCTCCTGGTGGTCTCTTTTTCACAGGAGATGGGACCGGTTTGTTGACCGTTTGGAAATGGTTGGCAGAGCAAGATCTTATGACGGCATCTCCATGA 1278 0.439 MGTKTARRTEALYAQTCAYWLAGRCTRKHCRFLHSETPTRQYETTPYHCGRQSRYFAEKTPKYNPNNESIKKSGEDGTSSSKATKKLSLSVCRYWMNGNCTHGDQCWNLHSWFHGEGFSTLAKLHEHKKTLLKFGKQMVTGIAVPDGSDKLFSGSTDGTVRIWDCHSGRCIHMMNLGGEVRSLISEGPWVFVGLPNAIKAWNINTAAELTLDGPKGQVLAMVVGHDTVFAGAKDGVIYAWRGSSGTNSPFEPVAALNGHTRAVFCLTVGRDKLYSGSMDYSIKVWDLDTLECTMTLNEHTDVVTSLICWDQYLLSSSLDNTVKIWAMNEVGTLEVIYTHNEEHGVVALGGMTDLEEKPILFCSTSDHSVGLYELPSFSRRGLLFSKQEVQAIQVAPGGLFFTGDGTGLLTVWKWLAEQDLMTASP 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g0990 425 SUPERFAMILY WD40 repeat-like 131 420 IPR036322 GO:0005515
Dere11g0990 425 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 256 289 - -
Dere11g0990 425 ProSiteProfiles Trp-Asp (WD) repeats profile. 296 335 IPR001680 GO:0005515
Dere11g0990 425 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 132 164 - -
Dere11g0990 425 ProSiteProfiles Trp-Asp (WD) repeats profile. 256 295 IPR001680 GO:0005515
Dere11g0990 425 PRINTS G protein beta WD-40 repeat signature 151 165 IPR020472 -
Dere11g0990 425 PRINTS G protein beta WD-40 repeat signature 273 287 IPR020472 -
Dere11g0990 425 PRINTS G protein beta WD-40 repeat signature 313 327 IPR020472 -
Dere11g0990 425 MobiDBLite consensus disorder prediction 59 81 - -
Dere11g0990 425 Pfam WD domain, G-beta repeat 291 325 IPR001680 GO:0005515
Dere11g0990 425 Pfam WD domain, G-beta repeat 251 286 IPR001680 GO:0005515
Dere11g0990 425 Pfam WD domain, G-beta repeat 123 164 IPR001680 GO:0005515
Dere11g0990 425 ProSiteProfiles Trp-Asp (WD) repeats profile. 132 173 IPR001680 GO:0005515
Dere11g0990 425 ProSiteProfiles Zinc finger C3H1-type profile. 11 37 IPR000571 GO:0046872
Dere11g0990 425 ProSiteProfiles Zinc finger C3H1-type profile. 86 113 IPR000571 GO:0046872
Dere11g0990 425 SUPERFAMILY CCCH zinc finger 88 111 IPR036855 GO:0046872
Dere11g0990 425 Gene3D - 190 423 IPR015943 GO:0005515
Dere11g0990 425 PANTHER - 52 418 IPR044715 -
Dere11g0990 425 Gene3D - 12 116 - -
Dere11g0990 425 Gene3D - 118 186 IPR015943 GO:0005515
Dere11g0990 425 ProSitePatterns Trp-Asp (WD) repeats signature. 273 287 IPR019775 -
Dere11g0990 425 SMART c3hfinal6 12 36 IPR000571 GO:0046872
Dere11g0990 425 SMART c3hfinal6 88 112 IPR000571 GO:0046872
Dere11g0990 425 SMART WD40_4 289 326 IPR001680 GO:0005515
Dere11g0990 425 SMART WD40_4 204 241 IPR001680 GO:0005515
Dere11g0990 425 SMART WD40_4 376 413 IPR001680 GO:0005515
Dere11g0990 425 SMART WD40_4 249 286 IPR001680 GO:0005515
Dere11g0990 425 SMART WD40_4 117 164 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g0990 Dere-ChrDere11 19060559 19062946 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g0990 148 295 Eukaryotic Initiation Factors Gene Family AT2G46290 28.655 1.65e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dere11g0990 WD40 7.5e-05 CL0186