Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g0987 ATGGGTACAAAAACAGCCAGAAGAACTGAAGCTCTTTATGCGCAAACTTGTGCATATTGGCTTGCTGGGCGATGCACCAGAAAACATTGTAGGTTTTTGCACAGTGAAACCCCAACTCGTCAATATGAGACTACTCCATATCATTGTGGGAGGCAGTCCCGTTACTTTGCTGAGAAGACCCCAAAATACAATCCAAATAATGAATCAATCAAAAAGAGTGAAGAAGATGGGACAAACTCCTCCAACGCTACTAAGAAGTTGTCACTGAGTGTTTGTAGATACTGGATGAATGGCAATTGCACACATGGTGATCAGTGCTGGAACTTGCATTCTTGGTTTCACGGCGAGGGATTTTCGACGCTAGCTAAACTACATGAACATAAGAAGATGGTCACTGGAATTGCACTTCCAGATGGATCAGACAAACTTTTCTCCGGCAGCACTGACGGGACAGTGCGGATATGGGACTGCCATTCTGGTCGATGCATTCACATGATGAATCTTGGTGGCGAAGTTAGGTCTTTGATCAGTGAGGGTCCGTGGGTTTTTGTTGGTTTACCGAATGCTATTAAGGCTTGGAACATTAACACAGCTGCTGAGCTTACTCTTGATGGACCTAAGGGGCAAGTCCTCGCCATGGTTGTCGGCCATGATACACTTTTTGCTGGAGCAAAGGATGGTGTTATATATGCTTGGAGAGGGAGTTCTGGAACGAATTCTCCCTTTGAACCGGTGGCAGCACTTAACGGCCATACTAGAGCTGTTTTTTGCTTGACTGTTGGACGCGATAAGTTGTACTCAGGTTCCATGGACCATAGCATAAAGGTCTGGGACCTAGACACATTACAGTGTACCATGACACTGAACCAGCATACTGATGTAGTGACGTCCCTTATTTGTTGGGATCAATATTTGTTATCAAGTTCATTGGACAACACTGTTAAGATTTGGGCTATGAATGAAGTGGGAACTTTGGAAGTAATATATACGCACAATGAAGAACATGGTGTTGTAGCACTTGGCGGGATGACTGATTTGGAAGAAAAACCTATTTTGTTTTGCTCTACCAGTGACCATGCTGTTGGGCTATATGAATTGCCGTCATTTTCTCGAAGGGGCCGATTATTCTCCAAACAAGAAGTTCAAGCAATTCAAGTGGCTCCTGGTGGTCTCTTTTTCACAGGAGATGGGACCGGTTTGTTGACCGTTTGGAAATGGTTGGCAGAGCAAGATCTTATGACGGCATCTGCATGA 1254 0.4458 MGTKTARRTEALYAQTCAYWLAGRCTRKHCRFLHSETPTRQYETTPYHCGRQSRYFAEKTPKYNPNNESIKKSEEDGTNSSNATKKLSLSVCRYWMNGNCTHGDQCWNLHSWFHGEGFSTLAKLHEHKKMVTGIALPDGSDKLFSGSTDGTVRIWDCHSGRCIHMMNLGGEVRSLISEGPWVFVGLPNAIKAWNINTAAELTLDGPKGQVLAMVVGHDTLFAGAKDGVIYAWRGSSGTNSPFEPVAALNGHTRAVFCLTVGRDKLYSGSMDHSIKVWDLDTLQCTMTLNQHTDVVTSLICWDQYLLSSSLDNTVKIWAMNEVGTLEVIYTHNEEHGVVALGGMTDLEEKPILFCSTSDHAVGLYELPSFSRRGRLFSKQEVQAIQVAPGGLFFTGDGTGLLTVWKWLAEQDLMTASA 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g0987 417 ProSiteProfiles Trp-Asp (WD) repeats profile. 124 165 IPR001680 GO:0005515
Dere11g0987 417 PANTHER - 52 411 IPR044715 -
Dere11g0987 417 SUPERFAMILY WD40 repeat-like 119 412 IPR036322 GO:0005515
Dere11g0987 417 Gene3D - 201 416 IPR015943 GO:0005515
Dere11g0987 417 Gene3D - 108 200 IPR015943 GO:0005515
Dere11g0987 417 Pfam WD domain, G-beta repeat 283 317 IPR001680 GO:0005515
Dere11g0987 417 Pfam WD domain, G-beta repeat 121 156 IPR001680 GO:0005515
Dere11g0987 417 Pfam WD domain, G-beta repeat 243 278 IPR001680 GO:0005515
Dere11g0987 417 Gene3D - 13 107 - -
Dere11g0987 417 MobiDBLite consensus disorder prediction 59 81 - -
Dere11g0987 417 ProSiteProfiles Trp-Asp (WD) repeats profile. 288 327 IPR001680 GO:0005515
Dere11g0987 417 PRINTS G protein beta WD-40 repeat signature 143 157 IPR020472 -
Dere11g0987 417 PRINTS G protein beta WD-40 repeat signature 305 319 IPR020472 -
Dere11g0987 417 PRINTS G protein beta WD-40 repeat signature 265 279 IPR020472 -
Dere11g0987 417 ProSiteProfiles Zinc finger C3H1-type profile. 11 37 IPR000571 GO:0046872
Dere11g0987 417 ProSiteProfiles Zinc finger C3H1-type profile. 86 113 IPR000571 GO:0046872
Dere11g0987 417 SUPERFAMILY CCCH zinc finger 88 111 IPR036855 GO:0046872
Dere11g0987 417 ProSitePatterns Trp-Asp (WD) repeats signature. 265 279 IPR019775 -
Dere11g0987 417 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 124 156 - -
Dere11g0987 417 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 248 281 - -
Dere11g0987 417 SMART WD40_4 196 233 IPR001680 GO:0005515
Dere11g0987 417 SMART WD40_4 281 318 IPR001680 GO:0005515
Dere11g0987 417 SMART WD40_4 368 405 IPR001680 GO:0005515
Dere11g0987 417 SMART WD40_4 117 156 IPR001680 GO:0005515
Dere11g0987 417 SMART WD40_4 241 278 IPR001680 GO:0005515
Dere11g0987 417 ProSiteProfiles Trp-Asp (WD) repeats profile. 248 287 IPR001680 GO:0005515
Dere11g0987 417 SMART c3hfinal6 12 36 IPR000571 GO:0046872
Dere11g0987 417 SMART c3hfinal6 88 112 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g0987 Dere-ChrDere11 19015213 19017599 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g0987 89 287 Eukaryotic Initiation Factors Gene Family AT2G46290 27.556 1.34e-08 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dere11g0987 WD40 0.00056 CL0186