Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g0969 ATGTGCAGGGGTGTTTTTGGAATATCAGAAAAGTTTCCGCCGTCGGTTTGCAGATTGGACGGCAACTCTAGCCATCATTACTCAGAAGGCTTGGTTTCTTCTCTTCTATTCCTACCAAACATCAAGACAATGGTGGAACAACGTAGAGAAGAAGAAGTTGAAGTTGGTGATGCTTCTTCCACAGAAGACTGGTTCTTGCAAGCGCAAGAACTCATACCCATTGCTCTTAACAAGGCTAAAAAGGTGAAGGGCTTTCCTGGAAGGTGGAGAGTGATTGTTTCAAAGCTAGAACAGATCCCATCCTGCTTATCAGACTTGTCTAGCCACCCTTGCTTCTCCAAGAACGTTCTGTGCAAGGAGCAACTGCAGGCCGTGTCGAAGACGCTCAAGGAAGCCATTGATTTCGCAGAGCTATGCGCGAAGGAGAAGTACGAAGGTAAGCTTCGAATGCAGAGCGATCTGGATGCGTTATCTGGGAAATTGGATTTGAATTTAAGAGATTGTGGGCTGTTGATCAAGACTGGTGTGCTTGGTGAGTCTACTTTGCCCTTGGGTGTGTCTGATGCTGCAAAACAAGGCAACGATATCAGGGAATTGCTCGCTCGCCTTCAGATCGGCCACTTGGAGGCAAAGCACAGAGCCATAGACGGTCTAGTTGAAGCTATGAAAGAAGAAGAACAGAGTGTTTTGGCTGTTCTAGGAAGGAGCAATGTCGCTGCTTTAGTTCAACTGTTAACGGCTACTTCTCCTAGGATACGGGAAAAGACAGTAACTGTTATATGCTCGCTTGCAGAATCTGGGAATTGTGAGAATTGGCTTGTTTCTGAAGGAGTTTTGCCACCTATTATTCGACTTGTCGAATCCGGTGGCACTGTCGGGAAAGAGAAGGCTGCAATATCTCTTCAGAGGTTGTCTATGTCGGAGGAAACAGCCCGGGAAATTGTCGGACATGGCGGTGTTAGACCGCTGATTGAGCTTTGTCTAACTGGGGATTCGGTGTCCCAATCTGCTGCTGCTTGTACTCTGAAGAACATATCTGCTGTCCCTGAAGTGAGACAAGCTTTGGCTGAAGAAGGGGTTGTGAAGACCATGATCAATCTCATTGATCATGGGATTCTATTGGGTTCCAAAGAGTATGCTTCAGAGTGCTTGCAGAATCTCACATCAAGCAATGAGAATCTAAGAAGGTCTGTTATATCAGAAGGTGGTATTAGGACCCTTCTGGCTTATCTTGATGGTCCACTCCCTCAAGAATCAGCAGTTGGAGCATTGAGGAATCTGGTTGGATCAGTCAGTGAGCAAGATTTACTTTCTTTAGGCTTCCTTCACCGTTTGATCCATGTGCTGAACTCGGGATCTCCGGGAGCTCAGCAGGCTGCGGTGTCAGCAATCTGCCGGGTTTTGAGCTCATCAGAGATGAAGAAAATGGTGGCTGATGCCGGGTTCATCCCGCTCCTCGTCAGAATGCTGGAGGCTAAATCGAACGGCGCAAGAGAGGTGGCGGCACAGGCGATCGGGAGCTTGATGACGGTAGCCCAAAACCGTAGAGAGCTGAAGAGGAATGGTAAGAGTGTACCAAATTTGGTTCAGTTGCTTGATCCAAGCCCACACAACACTGCAAAAAAATATGCAGTTTCCTGCCTTTGTGCACTTTCCTCAAGTAGGAAGTGCAAGAAGCTGATGATTTCTTATGGAGCAATTGGGTACTTGAAGAAGCTTATAGAGATGGACATTCCAGGAGCTAAAATTCTACTTGAGAGATTGGAAAGAGGGAAGTTGAGAAGCTTATTTAGCAGAAAAGAGGACCAAACAAGCCCTTTTCACAGCCTATCTATCACCCAAATGCCACAACACAGAGCAAAGCTAACTTTAAGAGCTAAGCCTTTGGGCAAAAAGAAGAAACACAGAAGTCCCCCAAAGGCTACCCCATTCTCTGTGAAACACAGTGTGATCTTTCTCTCTTTTCTGGTTTCTGTCTATTTCTTGGTCGCTCGCTGTTTGCTTCAATATATATAG 2016 0.4638 MCRGVFGISEKFPPSVCRLDGNSSHHYSEGLVSSLLFLPNIKTMVEQRREEEVEVGDASSTEDWFLQAQELIPIALNKAKKVKGFPGRWRVIVSKLEQIPSCLSDLSSHPCFSKNVLCKEQLQAVSKTLKEAIDFAELCAKEKYEGKLRMQSDLDALSGKLDLNLRDCGLLIKTGVLGESTLPLGVSDAAKQGNDIRELLARLQIGHLEAKHRAIDGLVEAMKEEEQSVLAVLGRSNVAALVQLLTATSPRIREKTVTVICSLAESGNCENWLVSEGVLPPIIRLVESGGTVGKEKAAISLQRLSMSEETAREIVGHGGVRPLIELCLTGDSVSQSAAACTLKNISAVPEVRQALAEEGVVKTMINLIDHGILLGSKEYASECLQNLTSSNENLRRSVISEGGIRTLLAYLDGPLPQESAVGALRNLVGSVSEQDLLSLGFLHRLIHVLNSGSPGAQQAAVSAICRVLSSSEMKKMVADAGFIPLLVRMLEAKSNGAREVAAQAIGSLMTVAQNRRELKRNGKSVPNLVQLLDPSPHNTAKKYAVSCLCALSSSRKCKKLMISYGAIGYLKKLIEMDIPGAKILLERLERGKLRSLFSRKEDQTSPFHSLSITQMPQHRAKLTLRAKPLGKKKKHRSPPKATPFSVKHSVIFLSFLVSVYFLVARCLLQYI 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g0969 671 Pfam Armadillo/beta-catenin-like repeat 470 508 IPR000225 GO:0005515
Dere11g0969 671 Pfam Armadillo/beta-catenin-like repeat 311 347 IPR000225 GO:0005515
Dere11g0969 671 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 481 517 IPR000225 GO:0005515
Dere11g0969 671 Gene3D - 185 414 IPR011989 -
Dere11g0969 671 SUPERFAMILY ARM repeat 196 577 IPR016024 -
Dere11g0969 671 Gene3D - 415 588 IPR011989 -
Dere11g0969 671 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 46 599 - -
Dere11g0969 671 SMART arm_5 307 347 IPR000225 GO:0005515
Dere11g0969 671 SMART arm_5 348 389 IPR000225 GO:0005515
Dere11g0969 671 SMART arm_5 390 429 IPR000225 GO:0005515
Dere11g0969 671 SMART arm_5 226 265 IPR000225 GO:0005515
Dere11g0969 671 SMART arm_5 511 553 IPR000225 GO:0005515
Dere11g0969 671 SMART arm_5 470 510 IPR000225 GO:0005515
Dere11g0969 671 SMART arm_5 430 469 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g0969 Dere-ChrDere11 18551943 18558135 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g0969 440 578 U-box Gene Family AT3G54790 30.714 1.26e-06 50.1