Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g0968 ATGGCAGGAGCTGAAGAAGCTACTGAAAGTATGAGTCAATCTAACAAACACACAATCATCAGAAGGTTCATAGGGGTCAGGCAAAGGCCGTCAGGGAGGTGGGTGGCTGAGATCAAAGACTCCTCTCAGCACGTGAGGCTATGGCTAGGAACCTACGACACACCCGAGGAAGCGGCTAGGGCTTACGACGAAGCGGCTCGAGCCTTGCGAGGCGAAAATGCCCGAACCAACTTCGCACCATCGGCGAGCCAATCACCCACAGCCACAGGTCAATCTGGGTCTGATGCGAAACATGGGCTAAGCTTTGCTTCTCTGAAAGCAAAGCTAAGCAAGAATCTTCAGAGTATAATGACTAGAGGAAGCCAAACTACGTCCTCGAAGAGTAGGGTAAGTGACCATTTTACCTTTGCTAGTATATTTCACCGCAGGAGGAGTAATTTCCTGCAGTACCAAGTCCCTGAAGTGGGTACAATGAAGAACATGGAGAGTATGGTGCAGCCTAGCATTATTGTGCCTCCTGCTCCTGAAACTGTTACTGAGCCCTGTGGTTCTTGGGAATGTTCTAGTGTTTCTGATTGTAGCTCTGAGCGGGTCGGGTTCCGGAGACCCGGGATCGGGTCCGACGGGTCGGATGTTGGGGACGATGGGCTTTTGGGGCAGTTGATGGGGTGGGTGGATAGTAGTAGCCCTGAGGAGGAGGGTTCAAGAAGTAAGAGGTTTAAGGTGTCTTCTTCTGTACTTGTGCCTCCAACTTTCAGTGGGTCTCCTTATAGTAGTACCTGTGGCTCCCCTTATAATGGGTATGATTCTCCATATAACAGAATTTAG 828 0.5036 MAGAEEATESMSQSNKHTIIRRFIGVRQRPSGRWVAEIKDSSQHVRLWLGTYDTPEEAARAYDEAARALRGENARTNFAPSASQSPTATGQSGSDAKHGLSFASLKAKLSKNLQSIMTRGSQTTSSKSRVSDHFTFASIFHRRRSNFLQYQVPEVGTMKNMESMVQPSIIVPPAPETVTEPCGSWECSSVSDCSSERVGFRRPGIGSDGSDVGDDGLLGQLMGWVDSSSPEEEGSRSKRFKVSSSVLVPPTFSGSPYSSTCGSPYNGYDSPYNRI 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g0968 275 MobiDBLite consensus disorder prediction 251 275 - -
Dere11g0968 275 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Dere11g0968 275 FunFam ethylene-responsive transcription factor RAP2-11 21 80 - -
Dere11g0968 275 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Dere11g0968 275 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Dere11g0968 275 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Dere11g0968 275 Pfam AP2 domain 22 71 IPR001471 GO:0003700|GO:0006355
Dere11g0968 275 MobiDBLite consensus disorder prediction 75 97 - -
Dere11g0968 275 SUPERFAMILY DNA-binding domain 23 80 IPR016177 GO:0003677
Dere11g0968 275 CDD AP2 22 81 IPR001471 GO:0003700|GO:0006355
Dere11g0968 275 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 128 - -
Dere11g0968 275 MobiDBLite consensus disorder prediction 76 97 - -
Dere11g0968 275 MobiDBLite consensus disorder prediction 251 267 - -
Dere11g0968 275 Gene3D AP2/ERF domain 21 80 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g0968 Dere-ChrDere11 18540049 18540876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g0968 5 84 AP2-EREBP Transcription Factor Family AT5G19790 60.241 1.18e-26 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere11g0968 AP2 9.2e-16 CL0081