Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g0954 ATGGTGAGAGGAAAGACACAGATGAAGCGTATAGAGAACGCCACAAGCAGGCAAGTGACCTTCTCAAAGAGGAGAAATGGGCTCTTGAAGAAGGCTTTTGAGCTCTCAGTTCTGTGTGATGCTGAAGTTGCTCTCATCATCTTCTCTCCCACAGGCAAGCTCTACGAATTTGCAAGCTCCAGCTTGCAGGAGACAATTGAACGCTACCGCAGTTATAACAGAGATTATCAAATGGCCACCAGATTCGTTGAACAAAATCCACAGCTTATAAAGCAAGAAATAACAAGTATGATGAAGAAGATTGAGCTTCTTGAAGTTTCAAAAAGGAAACTCTTGGGAGAAGATTTGGGTTCATGCTCCCTGGAAGAACTACAAGAGATAGAACAACAGTTGCAAAAGAGTGTAAGAAACGTTCGTGCAAGGAAGATTCAGATTTTTAAGGAGCAAAAGGAGCAACTAAAAGCAAAGGAAAATGCCCTAGCGGCAGAAAATGCAAGGCTCTCTGAGAAGTATGGCAACAATTCAAAGCAAGGAAGGCAGAATCAGACCAAGAATCTAGCCTCCTTGGAAAATAGTACAACTTCAGATGTGGAGACTGACTTGTTCATTGGACTTCCAGAAACAAGAACAAGATATATTCCTCCTCCTCCTCGGATCTAG 660 0.4258 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPTGKLYEFASSSLQETIERYRSYNRDYQMATRFVEQNPQLIKQEITSMMKKIELLEVSKRKLLGEDLGSCSLEELQEIEQQLQKSVRNVRARKIQIFKEQKEQLKAKENALAAENARLSEKYGNNSKQGRQNQTKNLASLENSTTSDVETDLFIGLPETRTRYIPPPPRI 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g0954 219 Coils Coil 121 141 - -
Dere11g0954 219 Gene3D - 14 91 IPR036879 GO:0003677|GO:0046983
Dere11g0954 219 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Dere11g0954 219 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Dere11g0954 219 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Dere11g0954 219 CDD MADS_MEF2_like 3 77 IPR033896 GO:0000977|GO:0045944
Dere11g0954 219 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere11g0954 219 SUPERFAMILY SRF-like 3 74 IPR036879 GO:0003677|GO:0046983
Dere11g0954 219 Coils Coil 143 170 - -
Dere11g0954 219 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 173 - -
Dere11g0954 219 Pfam K-box region 87 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere11g0954 219 FunFam MADS-box transcription factor 1 13 83 - -
Dere11g0954 219 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Dere11g0954 219 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Dere11g0954 219 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Dere11g0954 219 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g0954 Dere-ChrDere11 18277178 18294626 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g0954 1 156 MADS-box Gene Family AT2G45660 73.077 5.21e-77 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Dere11g0954 K-box 6.6e-25 No_clan