Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g0953 ATGGTGAAAGGAAAGACACAGATGAAGCTTATAGAGAATGCCACAAGCAGGCAAGTGACGTTCTCGAAGAGGAGAAGTGGGCTTTTGAAGAAGGCTTTTGAGCTCTCAGTTCTTTGCGATGTTCAGGTTGCGCTCATCATCTTCTCTCCAAGAGGCAAGCTCTATGAATTTGCAAGCTCCAGCTTGCAGGAGATAATTGAGCGTTATCGCATTCATAACAAAGATGCTCAAACAGCCACCAGATTCGTTGAACAAAATATGCAGCATCTAAAGCAAGAAACAGAGAGTATGATGAAGAAGATTCAGCTTCTTGAAGTCTCAAAACGGAAGTTCTTGGGAGAAGATTCGGGGTCGTGCTCCCTAGAAGAACTACAAGAGATGGAACAGAACTTGGAAAGGAGTGTAAGAAACGTTCGTGCAAGAAAGAATCAGGTTTTGATTGAACAGATGGAGAAACTAAAAGAAAAGGAAAAAGCCCTAGCAGCTGAAAATTCAATGCTCTCCGAGAAGTATCATATCCAGCCAAAGCAAGCAACTCAGAATGAGAGAGAAAATGCTGCATCCTTCGAAAATAGTCCAACTTCAGATGTGGAAACTGATTTGTTCATTGGGCTACCCGAAACAAGAACCAGACGTATTCCTCTTCCGCCTGTGGTCTAA 660 0.4288 MVKGKTQMKLIENATSRQVTFSKRRSGLLKKAFELSVLCDVQVALIIFSPRGKLYEFASSSLQEIIERYRIHNKDAQTATRFVEQNMQHLKQETESMMKKIQLLEVSKRKFLGEDSGSCSLEELQEMEQNLERSVRNVRARKNQVLIEQMEKLKEKEKALAAENSMLSEKYHIQPKQATQNERENAASFENSPTSDVETDLFIGLPETRTRRIPLPPVV 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g0953 219 Coils Coil 73 93 - -
Dere11g0953 219 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977|GO:0045944
Dere11g0953 219 MobiDBLite consensus disorder prediction 174 198 - -
Dere11g0953 219 MobiDBLite consensus disorder prediction 174 199 - -
Dere11g0953 219 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere11g0953 219 SUPERFAMILY SRF-like 3 74 IPR036879 GO:0003677|GO:0046983
Dere11g0953 219 Gene3D - 14 100 IPR036879 GO:0003677|GO:0046983
Dere11g0953 219 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere11g0953 219 PANTHER SERUM RESPONSE FACTOR HOMOLOG 4 172 - -
Dere11g0953 219 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Dere11g0953 219 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Dere11g0953 219 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Dere11g0953 219 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Dere11g0953 219 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Dere11g0953 219 Coils Coil 121 170 - -
Dere11g0953 219 FunFam MADS-box transcription factor MADS-MC 13 87 - -
Dere11g0953 219 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g0953 Dere-ChrDere11 18247634 18262808 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g0953 1 158 MADS-box Gene Family AT2G45660 68.354 2.82e-73 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Dere11g0953 K-box 4.6e-25 No_clan