Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g0950 ATGGTGAAAGGAAAGACACAGATGAAGCTTATAGAGAATGCCACAAGCAGGCAAGTGACGTTCTCCAAGAGGAGAAGCGGGCTTTTGAAGAAGGCTTTTGAGCTCTCAGTTCTTTGCGATGTTCAGGTTGCGCTCATCATCTTCTCTCCAAGAGGCAAACTCTATGAATTTGCAAGCTCCAGCTTGCAGGAGATAATTGAGCGTTATCGCATTCATAACAAAGATGCTCAAACAGCCACCAGATTCGTTGAACAAAATATGCAGTTGTTTATGGTTGCTTTTCAGAAATTTGTACAACTTTGA 303 0.4224 MVKGKTQMKLIENATSRQVTFSKRRSGLLKKAFELSVLCDVQVALIIFSPRGKLYEFASSSLQEIIERYRIHNKDAQTATRFVEQNMQLFMVAFQKFVQL 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g0950 100 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Dere11g0950 100 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Dere11g0950 100 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Dere11g0950 100 SUPERFAMILY SRF-like 3 74 IPR036879 GO:0003677|GO:0046983
Dere11g0950 100 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977|GO:0045944
Dere11g0950 100 FunFam MADS-box transcription factor 1 13 84 - -
Dere11g0950 100 Gene3D - 13 90 IPR036879 GO:0003677|GO:0046983
Dere11g0950 100 PANTHER SERUM RESPONSE FACTOR HOMOLOG 4 74 - -
Dere11g0950 100 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Dere11g0950 100 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Dere11g0950 100 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g0950 Dere-ChrDere11 18167459 18173393 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g0950 1 88 MADS-box Gene Family AT2G45660 72.727 7.17e-43 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Dere11g0950 SRF-TF 2.2e-26 No_clan