Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g0949 ATGAAGCTTATAGAGAACACCACAAGCAGGCAAGTGACGTTCTCGAAGAGGAGAAGTGGGCTTTTGAAGAAGGCTTTTGAGCTCTCAGTTCTTTGCGATGTTCAGGTTGCGCTCATCATCTTCTCTCCAAGAGGCAAGCTCTATGAATTTGCAAGCACCAGCTTGCAGGAGATAATTGAGCGTTATCGCATTCATAACAAAGATGCTCAAACAGCCACCAGATTCGTTGAACAAAATATGCAGCATCTAAAGCAAGAAACAGAAAGTATGATGAAGAAGATTCAGCTTCTTGAAGTGTCAAAACGGAAGTTCTTGGGAGAAGATTCGGGGTCATGCTCCCTAGAAGAACTACAAGAGATGGAACAGAACTTGGAAAGGAGTGTGAGAAACGTTCGTGCAAGAAAGAATCAGGTTTTGATTGAACAGATGGAGAAACTAAAAGAAAAGGAAAAAGCCCTAGCAGCTGAAAATTCAATGCTCTCCGAGAAGTGTCGTATCCAGCCAAAGCAAGCAACTCAGAATGAGAGAGAAAATGCTGCATTTTTTGAAAATAGTCCAACTTCAGACGTGGAAACTGACTTGTTCATTGGGCTACCAGAAACAAGAACCAGACGTATTCCTCTTCCTCCTGTGGTCTAA 639 0.4257 MKLIENTTSRQVTFSKRRSGLLKKAFELSVLCDVQVALIIFSPRGKLYEFASTSLQEIIERYRIHNKDAQTATRFVEQNMQHLKQETESMMKKIQLLEVSKRKFLGEDSGSCSLEELQEMEQNLERSVRNVRARKNQVLIEQMEKLKEKEKALAAENSMLSEKCRIQPKQATQNERENAAFFENSPTSDVETDLFIGLPETRTRRIPLPPVV 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g0949 212 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 159 - -
Dere11g0949 212 ProSiteProfiles K-box domain profile. 80 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere11g0949 212 SMART madsneu2 1 53 IPR002100 GO:0003677|GO:0046983
Dere11g0949 212 FunFam MADS-box transcription factor MADS-MC 6 80 - -
Dere11g0949 212 PRINTS MADS domain signature 16 31 IPR002100 GO:0003677|GO:0046983
Dere11g0949 212 PRINTS MADS domain signature 31 52 IPR002100 GO:0003677|GO:0046983
Dere11g0949 212 Gene3D - 6 103 IPR036879 GO:0003677|GO:0046983
Dere11g0949 212 ProSiteProfiles MADS-box domain profile. 1 54 IPR002100 GO:0003677|GO:0046983
Dere11g0949 212 CDD MADS_MEF2_like 1 71 IPR033896 GO:0000977|GO:0045944
Dere11g0949 212 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 4 50 IPR002100 GO:0003677|GO:0046983
Dere11g0949 212 Coils Coil 114 163 - -
Dere11g0949 212 Pfam K-box region 78 164 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere11g0949 212 Coils Coil 66 86 - -
Dere11g0949 212 SUPERFAMILY SRF-like 1 67 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g0949 Dere-ChrDere11 18087654 18102182 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g0949 1 151 MADS-box Gene Family AT2G45660 66.225 5.76e-67 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Dere11g0949 K-box 2.5e-25 No_clan