Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g0948 ATGAAGCTTATAGAGAATTCCGCAAGCAGGCAAGTGACGTTCACGAAGAGGAGAAGTGGGCTTTTGAAGAAGGCGTTTGAGCTCTCAGTTCTTTGCGATGTTCAGGTTGCTCTTATCATCTTCTCTCCAAGAGGCAAGCTCTATGAATTTGCAAACTCCAGCTTGCAGGAGATAATTGAGCGTTATCGCATTCATAACAAAGATGCTCAAACAGCCCCCAGATTCGTTGAACAAAATATGCAGCATCTAAAGCAAGAAACAGAAAGTATGATGAAGAAGATTCAGCTTCTTGAAGTGTCAAAACGGAAGTTCTTGGGAGAAGATACGGGGTCAAGCTCCCTAGAAGAACTACAAGAGATGGAACAGAACTTGGAAAGGAGTGTAAGAAACGTTCGTGCAAGAAAGAATCAGGTTTTGATTGAACAGATGGAGAAACTAAAAGAAAAGGAAAAAGCCCTAGCAGCTGAAAATTCAATGCTCTCCGAGAAGTATCGTATCCAGCCAAAGCAAGCAACACAGAATGAGCGAGAAAATGCTTCTGAAGTGGAAACTGACTTGTTCATTGGGCTACCAGAAACAAGAAATAGACGCATTCCTCTTCCTCCTCTGTTCTAA 615 0.4228 MKLIENSASRQVTFTKRRSGLLKKAFELSVLCDVQVALIIFSPRGKLYEFANSSLQEIIERYRIHNKDAQTAPRFVEQNMQHLKQETESMMKKIQLLEVSKRKFLGEDTGSSSLEELQEMEQNLERSVRNVRARKNQVLIEQMEKLKEKEKALAAENSMLSEKYRIQPKQATQNERENASEVETDLFIGLPETRNRRIPLPPLF 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g0948 204 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 162 - -
Dere11g0948 204 ProSiteProfiles MADS-box domain profile. 1 54 IPR002100 GO:0003677|GO:0046983
Dere11g0948 204 ProSiteProfiles K-box domain profile. 80 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere11g0948 204 Pfam K-box region 78 164 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere11g0948 204 CDD MADS_MEF2_like 1 71 IPR033896 GO:0000977|GO:0045944
Dere11g0948 204 Coils Coil 114 163 - -
Dere11g0948 204 FunFam MADS-box transcription factor MADS-MC 6 80 - -
Dere11g0948 204 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 4 50 IPR002100 GO:0003677|GO:0046983
Dere11g0948 204 Gene3D - 7 96 IPR036879 GO:0003677|GO:0046983
Dere11g0948 204 PRINTS MADS domain signature 16 31 IPR002100 GO:0003677|GO:0046983
Dere11g0948 204 PRINTS MADS domain signature 31 52 IPR002100 GO:0003677|GO:0046983
Dere11g0948 204 SMART madsneu2 1 53 IPR002100 GO:0003677|GO:0046983
Dere11g0948 204 SUPERFAMILY SRF-like 1 67 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g0948 Dere-ChrDere11 18030756 18046318 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g0948 1 151 MADS-box Gene Family AT2G45660 64.238 3.79e-65 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Dere11g0948 K-box 8.1e-24 No_clan