Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g0947 ATGAAGCGAATAGAAAACGACACAAGCAGGCAAGTGACTTTCTCAAAGAGAAGGAATGGACTCTTAAAGAAGGCTTTTGAGCTCTCAGTGCTTTGTGATGCTCAAATTGCTGTCATCATCTTCTCTCAGAGAGGCAAGCTCTATGAATTTGCAAGCTCAAGCATGCAGGAGACAATTGAACGTTACCGCAGTTGTACTAGAGATGCTGAAACAACCACCAGATTCGTTGAACAAAATTTTCAGCATTTAAGGCAAGAAACAGAAAGTATGAGGAAGAAGATAGAGCTTCTTGAAGTATCAAAACGGAGACTCTTGGGAGAAGGATTGGGATCATGTTCTCTTGAAGAACTACAAGGGATAGAACAACAGTTGGAAAAGAGTGTAAGAAACGTTCGAGCAAGAAAGAATGAAGTTTTTAAGGAACAAATGGACCAACTGGAAGAAAAGGATCAGTAG 456 0.4035 MKRIENDTSRQVTFSKRRNGLLKKAFELSVLCDAQIAVIIFSQRGKLYEFASSSMQETIERYRSCTRDAETTTRFVEQNFQHLRQETESMRKKIELLEVSKRRLLGEGLGSCSLEELQGIEQQLEKSVRNVRARKNEVFKEQMDQLEEKDQ 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g0947 151 Gene3D - 6 103 IPR036879 GO:0003677|GO:0046983
Dere11g0947 151 ProSiteProfiles MADS-box domain profile. 1 54 IPR002100 GO:0003677|GO:0046983
Dere11g0947 151 Pfam K-box region 80 150 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere11g0947 151 Coils Coil 114 137 - -
Dere11g0947 151 CDD MADS_MEF2_like 1 71 IPR033896 GO:0000977|GO:0045944
Dere11g0947 151 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 145 - -
Dere11g0947 151 FunFam MADS-box transcription factor 1 6 77 - -
Dere11g0947 151 SMART madsneu2 1 53 IPR002100 GO:0003677|GO:0046983
Dere11g0947 151 PRINTS MADS domain signature 16 31 IPR002100 GO:0003677|GO:0046983
Dere11g0947 151 PRINTS MADS domain signature 31 52 IPR002100 GO:0003677|GO:0046983
Dere11g0947 151 ProSiteProfiles K-box domain profile. 80 151 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere11g0947 151 SUPERFAMILY SRF-like 1 69 IPR036879 GO:0003677|GO:0046983
Dere11g0947 151 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 3 50 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g0947 Dere-ChrDere11 17991339 18019725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g0947 1 149 MADS-box Gene Family AT2G45660 69.799 3.50e-72 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Dere11g0947 K-box 1.3e-21 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere11g0947 11 17991339 18019725 Dere11g0947 11 17991339 18019725 ECH