Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g0910 ATGTTGGTGGCGTTTTATATCCGCGATGACTTGCTCAGTCTAACTTTCACGATCCTCAGGCTTGTTTCGACGGCTATGGCGGCTAATCGTCCTGCAAAGAGCGCCGGAAGGTCTACGGGGGAGATTTCCCAGGAAAAACGACACCGTTCGATATTTGAACTTCCACCCGACTTCTTCCATTCCTGTCGCCTCCTTCCTTTTTCTCAATCGTCCGTCTCCGAGCACCTTCATAATGGCGATCATTCAGTCCTTGAAACGCTTGACCCCATCGAGAACGACGCTAATGGCTCCCAAGACGTCGTTGTTTCGGTGCCTAGGTGGACCTGCAATACTTGCAAGGCTCAATTTGAGTCCCTTCATGACCAGCGTTTGCATTTCAAATCGGATATTCATCGGTTCAATGTGAAGTTGACAATTGCTGGAAAGAATACTGTGAAGGAAGAAGATTTTGAGGTGTTGACATCTGATTCTATTAAAGACTACGATGTTTCAAGTATATCAGGATCAGAAGATGATGATGATACCGAGATGGAGTCTCAAAGTCAAAATGACGTTCGTAACAAATTAAGTGAAAGTTTTAGGCAAAAGTTATTTATCTGTCTTCAGACAGGGCAGAGAGTTTCTATATGGAAGTGCTTAATCATGAATATGAGCGAGAATGTATTGTATGGGAATGAAAAGGCTGAGCATGAAGTAATTGAGAGGCTGAAATCATTGGCTCTTGAGCCCAGGAATAATGCCCACTTGAGAATTGTGCTGCTTGCGTCTGGTGGGCACTTTGCTGGTTGTGTGTTTGATGGTGATGCGGTTGTGGCTCACAAGACATTCCACAGATATGTTGTGAGGGCCAAAGCAGGAAAAAAACAGTCATCAAAAGATGCTTCTGGCAGGGCTGCACATTCTGCTGGGGCTTCACTTCGTCGACATAATGAACTTGCATTAAAGATGGAAATTCACGAGTTGCTTACTGCTTGGAGAAGTTATTTTGATGCTTCGAATTGCATTTTCCTACATGCTCCCTCAAGTAGTCGTCAACTGCTCTTCGATGGTGAAAGACCATATTTTAGCAATCAGCATTGTGTTATTAGAAATATCCCATTGACTGTTCGAAGGCCTACTTTGAGGGAAGCAAAGCGTGTATATAACCAGTTGACCCATGTATCCTATGAAACAGATGAGAAGGAAACTTTACAACACAAAGAAGATTCAGAGTCTATTCCCAGTACTATAAGATTTGCCGACCCAGCCACCAGCAAAGATGACATGGCTAACTTGGATGATAAGGTTAAAAGTGAGCCTAGTTCAAGTAAACAAGATGATGACAAATTCCTTATTTCAAGTGCCAGTGAGAGTGAAATAGAGATACATGGTAAATCAACTCCTTTACATCAAGCAGCACAATCTGGTGACTCTCAGAAGGTTTTGGAACTTCTGGAACAGGGCATGGATCCTTGCATCAAAGATGAAAGAGAACGGACCCCATATATGTTGGCACATGAGAAGGAAGTGAGGAATACTTTCAGAAGGTTCATGGCATCAAACCCTGAAAAATGGGATTGGCATGCTGCAAAAGTGCCTAGTGGATTGACCAGAGAAATGGAAGAATCGCAAGCAGCTAAGCAGGCTGAAAAAGATGCCAAGAGAAAAGCCAGAGCAAAAGAGTTAAAAAAATTACGTAAAGCTAAAGACAAGAAGGCTCAGGGTGAAGCTGCTAAGAATGCTTCTAAAACTGCAGAATACCAATTTAATGCTTCAACTTCTATTCGTAAGGGACAATCTCAAGCCAATGCTGGGGTGCAATTATCGAAAGAGGAGGAACTAAGAAGAGCTCAGGCTGAAGAAAGAGAAAAGAGAGCAGCTGCTGCTGAGAGAAGGATGGCTGCCCTCAAGATTCAAGGCAACAGTGCGACCACTGTCCCTAGCACTTCAGAACCAAAGCGTGGAATAGCCGGTGATATTTATTGTTCCTGTTGTAATACTTCACTTGCTGGTCAAGTTCCATTCCACAGATATAATTATAAATACTGCAGCACATCATGCATGCATGTACACAGGGAGATCCTAGAGGATGGTTGA 2076 0.4326 MLVAFYIRDDLLSLTFTILRLVSTAMAANRPAKSAGRSTGEISQEKRHRSIFELPPDFFHSCRLLPFSQSSVSEHLHNGDHSVLETLDPIENDANGSQDVVVSVPRWTCNTCKAQFESLHDQRLHFKSDIHRFNVKLTIAGKNTVKEEDFEVLTSDSIKDYDVSSISGSEDDDDTEMESQSQNDVRNKLSESFRQKLFICLQTGQRVSIWKCLIMNMSENVLYGNEKAEHEVIERLKSLALEPRNNAHLRIVLLASGGHFAGCVFDGDAVVAHKTFHRYVVRAKAGKKQSSKDASGRAAHSAGASLRRHNELALKMEIHELLTAWRSYFDASNCIFLHAPSSSRQLLFDGERPYFSNQHCVIRNIPLTVRRPTLREAKRVYNQLTHVSYETDEKETLQHKEDSESIPSTIRFADPATSKDDMANLDDKVKSEPSSSKQDDDKFLISSASESEIEIHGKSTPLHQAAQSGDSQKVLELLEQGMDPCIKDERERTPYMLAHEKEVRNTFRRFMASNPEKWDWHAAKVPSGLTREMEESQAAKQAEKDAKRKARAKELKKLRKAKDKKAQGEAAKNASKTAEYQFNASTSIRKGQSQANAGVQLSKEEELRRAQAEEREKRAAAAERRMAALKIQGNSATTVPSTSEPKRGIAGDIYCSCCNTSLAGQVPFHRYNYKYCSTSCMHVHREILEDG 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g0910 691 MobiDBLite consensus disorder prediction 529 578 - -
Dere11g0910 691 MobiDBLite consensus disorder prediction 536 550 - -
Dere11g0910 691 Coils Coil 603 632 - -
Dere11g0910 691 MobiDBLite consensus disorder prediction 420 442 - -
Dere11g0910 691 Pfam Vms1-associating treble clef domain 654 686 IPR041540 -
Dere11g0910 691 Coils Coil 533 553 - -
Dere11g0910 691 ProSiteProfiles Ankyrin repeat region circular profile. 457 489 - -
Dere11g0910 691 Gene3D - 431 520 IPR036770 -
Dere11g0910 691 MobiDBLite consensus disorder prediction 392 442 - -
Dere11g0910 691 PANTHER ANKYRIN REPEAT AND ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 43 690 IPR047139 -
Dere11g0910 691 ProSitePatterns Zinc finger C2H2 type domain signature. 109 131 IPR013087 -
Dere11g0910 691 ProSiteProfiles Ankyrin repeat profile. 457 489 IPR002110 GO:0005515
Dere11g0910 691 MobiDBLite consensus disorder prediction 163 186 - -
Dere11g0910 691 Pfam Bacteroidetes VLRF1 release factor 251 389 IPR041175 -
Dere11g0910 691 MobiDBLite consensus disorder prediction 392 407 - -
Dere11g0910 691 SUPERFAMILY Ankyrin repeat 454 510 IPR036770 -
Dere11g0910 691 SUPERFAMILY beta-beta-alpha zinc fingers 87 138 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g0910 Dere-ChrDere11 17211555 17220092 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g0910 46 638 C2H2 Transcription Factor Family AT1G01930 53.496 0.0 575