Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g0901 ATGGATCCAGTAGCCGCACAAGGTCGCCCTCTCCTACCTCCTTTTCTCAGTAGAGATCTTCATCTTCACCCGCACCACAAGTTCCAACCCCACAACCAGAATCACCTGAACAATAACCTTCATGATCAGGAGGATCAGCAAAAGGGTGATAATAGCAGCGTAGAGCGCGCCCACAAACAGGACGGCGATGACAACACGGCCGTCGCGGAGGGAAAGGAGTTTGGTACCGAAGAATGTGAGATTACGAGAAGACCTCGTGGTCGGCCGGCGGGGTCCAAGAACAAGCCCAAGCCTCCCATAATAATAACGCGGGACAGCGCGAACGCCCTCCGATCCCACGTCGTCGAGGTCGCCAACGGCTGCGATATCATGTACTGCGTCGCGACCTTCGCTCAGCGGCGACAGCGCGGGGTTTGCATTCTGAGCGGCAGTGGCACCGTCATGAACGTCACCCTCCGTCAGCCAACTTCGCCCAGTGCAGTTGTGACCTTACATGGGAGATTCGAGATCCTGTCCATGTTAGGCTCGTTCCTCCCACCTCCGGCTCCGCCGGCAGCTTCTGGGTTGGCAATATATTTGGCCGGCGGTCAAGGTCAGGTGGTCGGAGGCAACGTGGTGGGGCCGTTGCTGGCCGCAGGACCCGTAGTTATCATGGCTGCTTCGTTTGGTAATGCGGCGTATGAGAGGCTGCCGTTGGAGGAGGACGAGGCAGCGGTGGCGCCTCCGGGGAGCGGCGGATTAGGGTCTCCGGGAATTGTAGGGCAACAGCAGCAGCAGCAACAACAAATAGCGGCGGATCCTAACTCGTCGCTATTTCACGGAGTGCCTCAGAATCTTCTGAATTCATGCCAATTTCCAGCTGAAGGTTATTGGGGTGGAAGTGGAAGCTCTCGTCCTTCTTTTTAA 906 0.5706 MDPVAAQGRPLLPPFLSRDLHLHPHHKFQPHNQNHLNNNLHDQEDQQKGDNSSVERAHKQDGDDNTAVAEGKEFGTEECEITRRPRGRPAGSKNKPKPPIIITRDSANALRSHVVEVANGCDIMYCVATFAQRRQRGVCILSGSGTVMNVTLRQPTSPSAVVTLHGRFEILSMLGSFLPPPAPPAASGLAIYLAGGQGQVVGGNVVGPLLAAGPVVIMAASFGNAAYERLPLEEDEAAVAPPGSGGLGSPGIVGQQQQQQQQIAADPNSSLFHGVPQNLLNSCQFPAEGYWGGSGSSRPSF 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g0901 301 PIRSF ESCAROLA 21 301 IPR014476 GO:0003680
Dere11g0901 301 CDD DUF296 111 178 IPR005175 -
Dere11g0901 301 SUPERFAMILY AF0104/ALDC/Ptd012-like 107 242 - -
Dere11g0901 301 MobiDBLite consensus disorder prediction 238 268 - -
Dere11g0901 301 MobiDBLite consensus disorder prediction 41 87 - -
Dere11g0901 301 FunFam AT-hook motif nuclear-localized protein 110 237 - -
Dere11g0901 301 MobiDBLite consensus disorder prediction 250 268 - -
Dere11g0901 301 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 45 281 IPR014476 GO:0003680
Dere11g0901 301 Gene3D - 110 239 - -
Dere11g0901 301 MobiDBLite consensus disorder prediction 25 100 - -
Dere11g0901 301 Pfam Plants and Prokaryotes Conserved (PCC) domain 111 223 IPR005175 -
Dere11g0901 301 ProSiteProfiles PPC domain profile profile. 107 243 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g0901 Dere-ChrDere11 17072800 17073705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g0901 1 301 AT-hook Motif Nuclear Localized (AHL) Family AT2G45430 60.245 3.63e-84 254