Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g0895 ATGGAAGCAAGAGATGCCGTATCTGGGGTTACAGTGATAGGAGCAGAAGCTCCATCAGCCTATCACATGGCGCCGAGGAGTGAAGCTCCAAGCCAGAGTCATGTTCCTGAAGCAGCAGCAGGTGGTGTTGGTGCCTCACCAGTGAGTGTGGGATTGAATGGGACAACAATGAAGAAGAAACGGGGTAGGCCCAGGAAATATGGACCGGATGGGGAGGTCAATAGGGCATTGTCACCATTGCCAATCTCATCTTCGGCTCCATCTTCTAATAACTTTTCCAGTGGGAAGCGGGGCAAACTGAAAGGGATGGAGTACAAGCAGCAACATAAAGTTGGTTTGGAGCATTTAGGTGACTTGAATGGATGTTCTATTGGTACAAACTTTATGCCCCATATCATCACTGTCAACGCTGGTGAGGACATTACAATGAAGGTTATATCTTTCTCGCAACAAGGACCACGAGCTATATGCATCTTGTCTGCTAATGGTGTAATTTCAAATGTTACACTTCGTCAGGCTGATTCTTCGGGGGGTACTTTGACCTATGAGGGCCGGTTTGAGATACTTTCCTTGTCTGGATCATTCATGCCTACTGAAAGCCAAGGAACAAGAAGCAGGTCAGGCGGGATGAGTGTCTCTTTGGCAGGCCCTGATGGGCGTATTGTAGGTGGCGGAGTAGCTGGTCTTCTTATAGCTGCCAGTCCTGTGCAGGTGGTGGTAGGAAGTTTTCTACCGAGCAACCACCAAGATCTGAAACCTAAGAAGCCCAAGTCTAATTGTGCTCCAGCTTCTGTTACCCCATCAACTGCAGTGTCTTCTGCACCACCACCCTCAACTAATATTGAAAACGATGATGGCATGGATGAACATTTGCTGCTGAGTTCCAACACTCTTAGCTCGAATCTAGATTCTCCTGGCTCCTTCCGAAGAGAAAACTGGGTTAACATGCACTCTATGCTGGACACAAGAAAATCAACTACTGATATTAACAAATTTTTGCCTGATACTTAA 1011 0.4698 MEARDAVSGVTVIGAEAPSAYHMAPRSEAPSQSHVPEAAAGGVGASPVSVGLNGTTMKKKRGRPRKYGPDGEVNRALSPLPISSSAPSSNNFSSGKRGKLKGMEYKQQHKVGLEHLGDLNGCSIGTNFMPHIITVNAGEDITMKVISFSQQGPRAICILSANGVISNVTLRQADSSGGTLTYEGRFEILSLSGSFMPTESQGTRSRSGGMSVSLAGPDGRIVGGGVAGLLIAASPVQVVVGSFLPSNHQDLKPKKPKSNCAPASVTPSTAVSSAPPPSTNIENDDGMDEHLLLSSNTLSSNLDSPGSFRRENWVNMHSMLDTRKSTTDINKFLPDT 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g0895 336 CDD DUF296 130 243 IPR005175 -
Dere11g0895 336 MobiDBLite consensus disorder prediction 78 96 - -
Dere11g0895 336 MobiDBLite consensus disorder prediction 15 98 - -
Dere11g0895 336 Coils Coil 335 336 - -
Dere11g0895 336 SUPERFAMILY AF0104/ALDC/Ptd012-like 128 249 - -
Dere11g0895 336 Pfam Plants and Prokaryotes Conserved (PCC) domain 130 243 IPR005175 -
Dere11g0895 336 Gene3D - 130 256 - -
Dere11g0895 336 MobiDBLite consensus disorder prediction 246 286 - -
Dere11g0895 336 FunFam AT-hook motif nuclear-localized protein 1-like 130 260 - -
Dere11g0895 336 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 28 297 IPR039605 GO:0003680
Dere11g0895 336 ProSiteProfiles PPC domain profile profile. 125 266 IPR005175 -
Dere11g0895 336 MobiDBLite consensus disorder prediction 261 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g0895 Dere-ChrDere11 16940564 16949909 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g0895 9 274 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 58.333 7.24e-99 294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere12g0789 12 15046789 15053728 Dere11g0895 11 16940564 16949909 CCT
Dere11g0895 11 16940564 16949909 Dere11g0895 11 16940564 16949909 ECH