Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g0883 ATGTCGTCTCTGCTTCCGTACCTCCTGCAGAAACCTCTCCTATTCCTCTTCCTCTCTTTCGTCCTCATTTCTGCTTCTCCATCTGAGCTTGACACTCTAATGGCAATCAAACACTCTCTAGATCCAGAGAACCGCCTTCTGACTTCATGGGCTCCATACTCCGACCCATGTGGTGGCACTTTCGACGGCGTGGCCTGCAACGCGCAGGGCCACGTCGCTAACATTTCGCTGCAGGGAAAGGGTCTCTCTGGGACACTACCTGCAGCTGTGGGTGAGCTCAAGAGCTTGACGGGTCTCTACCTGCACTTCAATGCTCTGAGTGGGACGATACCCATGGAGATAGCGAATTTGACTGAGCTTACTGACTTGTATCTTAATGTCAATAGTCTTTCCGGCGATATCCCTCGTGACATTGGCAACATGTCTAGTCTTCAAGTTTTGCAGCTTTGTTATAACAAGTTCACAGGAAGTATTCCAACTGAACTGGGAAACTTGAAGAGGCTCAGTGTTCTTGCTCTGCAATATAACCAATTGAGTGGTGCAATTCCTGCTAGTTTGGGTCAATTGGAGACATTAACGAGGTTGGATGTGAGCTTTAACGGCCTCTTTGGTCCTATTCCAGTGAAACTAGCAGATGCCCCCAAACTAGAAATCCTTGACATTCGAAACAATTCTCTCTCAGGCAATGTCCCTGCAGCCCTGGGAAGACTGAAAGGAGGTTTCCAGTACATCAACAATGCTGGTTTATGTGGGTCTGAATTTACCAATTTGGTTTCTTGTAAGTCTTTATTTGATCCAAGTAAACCTGAACCGTTTGAACCTAGTAATCTTTCCACAAAGGATCTTCCAGCGTCAGTTGATCCAAAAGATGAAACCTGTAGTGATGACAGCCATTGTAAAAAGTCATTGCAATCTTCAAGAATGGCTTTGGTTTTTGGAGTGATTGGAGTTATTGTAGCTTCCACAGTTTCTGGACTTTCTGTTTTTGTGTGGTACCGTCGTCGGAAACAGAAGATGGGAAGTGCTATCGATGCTTCTAGTAGCCGCCTTACTGGGAAAAATGCGACGCCTTTGATCAGTTTAGAGTATTCTAATGGATGGGATCCATTAGCCAAAGGTAAAAGTAGTTATTCCCAGGAAGTACTAGAAAGTTTAATGTTCAATCTAGAGGAGGTAGAGCGTGCAACTCAGTGCTTCTCAGAGGTGAACTTGCTGGGAAAGAGTAGTTTTTCAGGTATGTACAAGGGAATTTTGAGGGATGGATCAGTTGTGGTGGTGAAGTGCATCAACAAGACAAGCTGCAAATCTGATGAAACTGAGTTCTTGAAAGGGCTGAAGATACTGACCTCGTTGAAACACGAAAATCTTGTTCGCTTTAGAGGGTTTTGCTGTTCTAAAGGCAAGGGAGGATGCTTCCTTGTTTATGATTTTACCTCAAATGGAAGTTTGTCACAGTATCTTGATGTTAAGAGAGGGGATAGTAGGGTTTTGGAATGGCCTACTAGAGTATCCATCATCCGTGGTATTGCTAGAGGTATTGCTTATCTGCATATAAAGAAAGGAAGAAAAGAGGCTCTAGTTCACCAGAATATATCAGCTAAAAAAGTGCTTCTCGATTCGCATTATAAACCGTTACTTTCAGATTCAGGATTGCACAAACTTCTTGCAGATGATGTTGTATTCTCCACTCTTAAAGCTACTGCTGCCATGGGATACCTTGCTCCAGAATACACAACCACTGGTTGCCTGACGGAAAAAAGTGACATATATGCTTTTGGGGTGATAGTTTTCCAGCTTCTTACTGGAAAGAGTGATATCACTCAGTTAAATCGTTACCAACCAGAAACACCTGGTTTCAAAGATATGGTTGACGGAAACCTTGAAGGGAGGTTCTCAGAACCAGAGGCAGCTAAACTAGGGAGAATTGCTCTGCTTTGCACTCATGAATCGTCTTATGAACGACCATCTATGGACTATGTGGTTCGAGAACTATGTGAAAAGTGA 2004 0.4376 MSSLLPYLLQKPLLFLFLSFVLISASPSELDTLMAIKHSLDPENRLLTSWAPYSDPCGGTFDGVACNAQGHVANISLQGKGLSGTLPAAVGELKSLTGLYLHFNALSGTIPMEIANLTELTDLYLNVNSLSGDIPRDIGNMSSLQVLQLCYNKFTGSIPTELGNLKRLSVLALQYNQLSGAIPASLGQLETLTRLDVSFNGLFGPIPVKLADAPKLEILDIRNNSLSGNVPAALGRLKGGFQYINNAGLCGSEFTNLVSCKSLFDPSKPEPFEPSNLSTKDLPASVDPKDETCSDDSHCKKSLQSSRMALVFGVIGVIVASTVSGLSVFVWYRRRKQKMGSAIDASSSRLTGKNATPLISLEYSNGWDPLAKGKSSYSQEVLESLMFNLEEVERATQCFSEVNLLGKSSFSGMYKGILRDGSVVVVKCINKTSCKSDETEFLKGLKILTSLKHENLVRFRGFCCSKGKGGCFLVYDFTSNGSLSQYLDVKRGDSRVLEWPTRVSIIRGIARGIAYLHIKKGRKEALVHQNISAKKVLLDSHYKPLLSDSGLHKLLADDVVFSTLKATAAMGYLAPEYTTTGCLTEKSDIYAFGVIVFQLLTGKSDITQLNRYQPETPGFKDMVDGNLEGRFSEPEAAKLGRIALLCTHESSYERPSMDYVVRELCEK 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g0883 667 MobiDBLite consensus disorder prediction 271 298 - -
Dere11g0883 667 CDD STKc_IRAK 405 666 - -
Dere11g0883 667 CDD TM_EGFR-like 305 338 - -
Dere11g0883 667 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 82 664 - -
Dere11g0883 667 FunFam Leucine-rich repeat receptor-like kinase 28 137 - -
Dere11g0883 667 Pfam Leucine Rich Repeat 215 235 IPR001611 GO:0005515
Dere11g0883 667 SUPERFAMILY Protein kinase-like (PK-like) 376 663 IPR011009 -
Dere11g0883 667 Gene3D Phosphorylase Kinase; domain 1 369 477 - -
Dere11g0883 667 Pfam Leucine rich repeat N-terminal domain 27 67 IPR013210 -
Dere11g0883 667 Pfam Leucine rich repeat 143 202 IPR001611 GO:0005515
Dere11g0883 667 ProSiteProfiles Protein kinase domain profile. 399 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere11g0883 667 FunFam Protein NSP-INTERACTING KINASE 2 139 261 - -
Dere11g0883 667 Gene3D Ribonuclease Inhibitor 182 264 IPR032675 -
Dere11g0883 667 SUPERFAMILY L domain-like 26 238 - -
Dere11g0883 667 Gene3D Ribonuclease Inhibitor 26 181 IPR032675 -
Dere11g0883 667 MobiDBLite consensus disorder prediction 284 298 - -
Dere11g0883 667 Pfam Protein tyrosine and serine/threonine kinase 403 664 IPR001245 GO:0004672|GO:0006468
Dere11g0883 667 FunFam Protein NSP-INTERACTING KINASE 2 371 477 - -
Dere11g0883 667 Gene3D Transferase(Phosphotransferase) domain 1 478 667 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g0883 Dere-ChrDere11 16745226 16748800 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g0883 14 512 Miscellaneous Gene Families AT4G22730 50.570 7.24e-175 507
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Dere11g0883 PK_Tyr_Ser-Thr 8.6e-37 CL0016