Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g0864 ATGGGGAGCATGGGTGAACCGGACAGAAAACGGCGTCACTTTAGCTCCTTGTCCCCTACAGCTGCAGCCGCTACTGCCAAGAAACTACCCTTCTTGCCCATTTCTGAAGACAAAAAGCTTGATATTGCTGTACTTCAGTTTCAAAATCAAAAGCTTACACAGAAATTAGAAACCCAGAAATTAGAATATACGGCTCTTGAGAATAAATTTTCTCAACTAAAGGATCGGCAACGTTCCTATGATTCCACGTTAACAGTTGTCAAGAAGTCTTGGGAACAGGTAATTGATGATTTGGTGTCATGTTCTGCTCACATAAGAGAGTCTAGCAGCAGCAAATTGGATTCAAACATTACATCAATCACGGGAGTTGGAAGTCCATCTACTGTTGTGGATGATCTTCTTAGTCGACTTGAGCAAACTGGTGCAACTGAAAGTTCCTCCACATATAGTTGGGCTAACCAGATGGAAGATCAGAGGCAAGTTACTATTGAAAAAGCTAACAGCATTTTGCAAAATATTGTAACAGCCATTAATGACCTTTGGTGTCTAAAAGATGGATTGCATGCTGCAGTGTCAACAAAACTTCCAGGAGATGGTTTGTGTGGGCTGAAGTCCTCCATTGATCTAAAGTTGGAAGTTAAAAGCTTGAGATCAGCGTTCAGTGAACTTCATCTAAAGCACAAATCTTTGGCTAGAGAGTTCCAAAGTCATCGAGATGTTGATGCCAAAAACAAAGCTGAACTTAATAGACTGAAAGGAGAACTGGAAAGCACTGTTGCAGAGTTAGATGAAAGTAATCACAAACTGGCAACTCTTAAGGCAGAGAGAGATGCAGCAAAAGGGGCAGTTTTACCTGTCTTAAATGTTGGAACTAAGCCTGTTGGTAGTGAAAAGATTAGAGACAAACAAAAGGACTTGCAAGACATGGAATTTTCTCTGAAGGAGATACTGAACCATGGATCATCCCGACTAGTGGAACTGAAAAATCTTCATCAGGAAAGAATAAGAATATTGCAGCAGTTGTGTGATTTACAGAACACAGTGAAGAATTTGAAGTGTATTACCTCTTCTCGTGCATTCCAATTGGCAAGAGATCAGATAGAAAAGTCTAAAGCAGAAGTTCTTGAGTATCAGACCTTATTCGAGAAACTACAGGTTGAGAAGGATAATCTTGCATGGAGGGAAAGGGAGTGGTACATAAAAAGTGATTTGGTAGATGTTTTTCAAAGATCTGTGGCAGTTGCTGATTCTAAAGTGGCTGATTTAGGGACTGAGATGAAGAAAAAAATTGAGGAGAGAAATTTGATTGAAAGTAAGCTGCAAGAGGCAGCAAGGGAACCTGGAAGGAAGCAAATTATTTCAGAGTTTAGATCCCTGGTCTCTTCATTTCCTGAGGAAATGGGATCTATGCAAAGTCAATTAAGCAAGTATAAAGAAGCAGCCTCAGACATCCATTCTCTGCGTGCAGATGTACAGTGTCTCTCTAGTATTCTTGAGAGGAAGGTAAAAGAATGTGACGTTTTATCCATTAGATCTGCTGATCAACTTGCTGAGATACAGAGGCTGCTTGCTGTGGTCCATGATTTGAGAGAAAGTGAGATGGAGTTGAAGTTGATTCTGGAAATGTATAGACGTGAGTCCATTGATTCAAGGGATGTTGTGGAAGCACGGGATTCAGAATACAGAGCGTGGGCACATGTTCAAAGTTTGAAATCTTCTCTTGACGAGCACAACTTGGAGCTTCGAGTTAAGACAGCAAATGAAGCAGAGGCTAGATCTCAACAGAGGCTTGCTACTGCTGAAGCTGAGATAGTGGACCTGAGACAGAAACTAGAAGCTTCTAAAAGGGAGAAGGGTAACCTGTCTGATGTCTTGAAATCAAAAAACGAGGAAAATGAGGCCTACTTATCTGAAATAGAGACTATTGGACAAGCATATGATGATATGCAAACACAAAACCAACATCTGTTGCAGCAAATTACTGAAAGAGATGACTACAATATCAAGCTTGTCCTAGAGGGTGTGAGGGCAAGACAAAAACAGGATTCTCTGGTCATGGAGAAGCGGGGCATGGAACAAGAGATCCAGCAAGCAAATGCATCTTATAATTTTTATGACATGAAAGCTGCTAGAATTGAAGACCAGTTAAAGTTTTGTTCAGATCAGTGTCAGAGACTTGCAGAGGATAAGCTTCAAAGTTCTGTTAATTTGGAAAATACTCAAAGGAGATTGTTGGACGTCAGAAAATCATCTCAACAAGCCAGAGACACAGTGGAGGAAGTGCAATCTAAAGTTGGTATTAGTCGGGTAACTCGTATGGAGTTACAAGTGGACCTTGAGAGAGAAAGGTTTGCTAGGAAAAGATTGGAGGAGGACCTGGAGGTTGCCAGGAGAAAGGTTTCATACCTTCGGGCACAGTCTGAGGGCTCCTCTGTTATTGAAAAGCTTCAACAGGAACTGGGAGAATACAGGGAAATTGTCAAGTGCGGTGTCTGCCAAGACAGGACCAAAGAGGTTGTAATTACAAAATGCTATCACTTGCTCTGCAATCCATGTATCCAGAAAGTTGTTGAGAGTAGGCACCGCAAATGTCCACTGTGTGCTGCAAGCTTTGGGCCTAATGATGTTAAGCCCATTTATTTGTAA 2646 0.4131 MGSMGEPDRKRRHFSSLSPTAAAATAKKLPFLPISEDKKLDIAVLQFQNQKLTQKLETQKLEYTALENKFSQLKDRQRSYDSTLTVVKKSWEQVIDDLVSCSAHIRESSSSKLDSNITSITGVGSPSTVVDDLLSRLEQTGATESSSTYSWANQMEDQRQVTIEKANSILQNIVTAINDLWCLKDGLHAAVSTKLPGDGLCGLKSSIDLKLEVKSLRSAFSELHLKHKSLAREFQSHRDVDAKNKAELNRLKGELESTVAELDESNHKLATLKAERDAAKGAVLPVLNVGTKPVGSEKIRDKQKDLQDMEFSLKEILNHGSSRLVELKNLHQERIRILQQLCDLQNTVKNLKCITSSRAFQLARDQIEKSKAEVLEYQTLFEKLQVEKDNLAWREREWYIKSDLVDVFQRSVAVADSKVADLGTEMKKKIEERNLIESKLQEAAREPGRKQIISEFRSLVSSFPEEMGSMQSQLSKYKEAASDIHSLRADVQCLSSILERKVKECDVLSIRSADQLAEIQRLLAVVHDLRESEMELKLILEMYRRESIDSRDVVEARDSEYRAWAHVQSLKSSLDEHNLELRVKTANEAEARSQQRLATAEAEIVDLRQKLEASKREKGNLSDVLKSKNEENEAYLSEIETIGQAYDDMQTQNQHLLQQITERDDYNIKLVLEGVRARQKQDSLVMEKRGMEQEIQQANASYNFYDMKAARIEDQLKFCSDQCQRLAEDKLQSSVNLENTQRRLLDVRKSSQQARDTVEEVQSKVGISRVTRMELQVDLERERFARKRLEEDLEVARRKVSYLRAQSEGSSVIEKLQQELGEYREIVKCGVCQDRTKEVVITKCYHLLCNPCIQKVVESRHRKCPLCAASFGPNDVKPIYL 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g0864 881 MobiDBLite consensus disorder prediction 1 15 - -
Dere11g0864 881 Coils Coil 709 729 - -
Dere11g0864 881 Coils Coil 772 806 - -
Dere11g0864 881 Coils Coil 367 387 - -
Dere11g0864 881 MobiDBLite consensus disorder prediction 1 22 - -
Dere11g0864 881 ProSitePatterns Zinc finger RING-type signature. 844 853 IPR017907 -
Dere11g0864 881 SMART ring_2 829 867 IPR001841 -
Dere11g0864 881 Coils Coil 426 446 - -
Dere11g0864 881 CDD RING-HC_Bre1-like 822 879 - -
Dere11g0864 881 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 810 881 IPR013083 -
Dere11g0864 881 Pfam Zinc finger, C3HC4 type (RING finger) 827 869 - -
Dere11g0864 881 Coils Coil 583 631 - -
Dere11g0864 881 SUPERFAMILY RING/U-box 821 880 - -
Dere11g0864 881 Coils Coil 42 76 - -
Dere11g0864 881 ProSiteProfiles Zinc finger RING-type profile. 829 867 IPR001841 -
Dere11g0864 881 PANTHER RING FINGER PROTEIN-RELATED 1 881 IPR013956 GO:0004842|GO:0010390
Dere11g0864 881 Coils Coil 245 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g0864 Dere-ChrDere11 16237446 16256002 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g0864 787 880 C3H Transcription Factor Family AT3G58030 30.612 6.71e-08 53.9