Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g0858 ATGAACTACCAGCAGAGGCTACAAGTAGTGGCGAAAATCATACTCGAGCATGACGCACGCACTGACGAGGCGCCGCTTAACTACGATGATCTCGGGATCAAGGCGACCCTCAAAGCCCACCAAGTGGAGGGAGTTTCGTGGCTCATACGAAGATATAAACTTGGCGTCAACGTTGTCCTCGTGGTTTTATGTCCTCTGAGTGTGACAGATGGTTGGGTTTCAGAGATAGATAAATTTGCCCCCAAACTAAAAGTAATTAAATATGTTGGTGGGAAAGAATACCGGCGCAGTTTACGCAGAAATATTCTTGAGCATGTGAAGGGACAGTCAACAGCAGTCAATGTTTTGTTACCTTTTGACGTGCTATTGACAACATATGATATTGCACTAATGGATCAAGATTTTCTTTCTCAAATACCATGGAAGTATGCAATTATTGATGAAGCTCAAAGACTTAAAAACCCTTCAAGTGTTTTGTATAATGTTCTCAAAGAGCACTATGTCATGCCAAGGCGATTGTTGATGACTGGCACACCTATTCAGAACAACCTTTCTGAACTGTGGGCATTGATGTATTTTTGTATGCCTTCTGTCTTTGGTACACTTGAAGAGTTCCTTTCCACATTCAAGGACATCAGTGATCCCACATCAGTTCAAGATGCACTGAAGGTAAAGGAACCGCTTAAAATACTGAAAAGCATATTGGGAGCTTTCATGCTTCGGCGAACCAAGTCAAAGCTTATAGAATGTGGAACTCTTGTGCTACCTCCTCTCACTGAGTTAACTATGATGGCACCCCTAGTTAGCCTGCAGAAAAAGGTGTACATGTCTATTTTGAGGAAGGAGCTTCCTAAGTTACTTGCACTATCTTCTGGAACTTCAAATCATCAGTCCCTGCAGAATATTGTCTTACAGCTAAGGAAAGCATGCAGCCATCCATATCTTTTTCCAGGTATTGAGCCTGAGCCTTATGAAGAAGGTGAACATCTGGTTCAGGCCAGTGGTAAGCTGCTGATCCTGGACCTACTTCTTCAGAAGTTACATAATTCTGGACACCGGGTTCTTCTTTTTGCACAAATGACCCAAACACTTGACATTTTGCAGGACTTTTTGGAATTACGAAAATATTCCTATGAGCGTCTTGATGGGTCAATTAGGGCTGAGGAGCGCTTTGCAGCAATAAAAAGTTTCAGTGACCCATCAGCTAATTTGGGTTTGAATTCTGAAGCTGACCAAAATGTAGCTTTTGTCTTCATGATCTCGGCAAGAGCTGGGGGAGTTGGCTTGAATCTTGTGGCTGCTGACACTGTTATATTCTATGAGCAAGACTGGAACCCTCAAGTAGACAAGCAGGCTTTGCAGCGAGCCCATCGGATCGGCCAACTAAACCATGTGTTGTGCATAAACCTTGTTTCGAAAAGTACAATAGAAGAGGTAATTATGCAGAGGGCAGAGAAGAAATTGCAGCTTAGCCTCAACGTTATAGGTGATAGTGTTCAGGAAAATGAAGATGAACAAACAGCAGGAGTTGGAACATATGATTTGAAATCTATCATATTTGGTTTACATATGTTTGATCCCAGTGAAATTAGTGATGGAAAATTTGGAGACACGAATTTATCAGAAATTAATGCCATGGCTGACAAGGTGATTGCAATGCGTGACATGCAAATATCTGACAAGGATGACAGGAAATTTGATGTCTGCCCTAGAAATCTTCTAGTATCACATGATGCTAAGGAAAGAGGTTCTACCTCTCTTTACTGTGATCCTGGTCTTGATGAGGCTTCATATCTTTCCTGGGTTAAAAAATTTGAGGAAGTGTCAAAATCAAGTGGTGATTCAGTCATGGAGTTGAGGAACAGAAGAGTCTTGGATGTTGAAAAGCGTCTGAAACTTGAGGTTGCAAAGAAGAAGGCAGAGGAAAAGAAGCTGTATATGTGGGAAGCTGTTGGATACCATTCATTGAATGTAAATGACCCTATCAGCCCTCCCGAGGGTGGTATTACATCAGATGCTGGATCTGTTCATTTTGTTTATGGAGACTGCTCAAATCCATCAAATATTTGTCCATCTGAACCTGCCCTAATATTCAGCTGTGTTGATAACTCTGGAAAATGGGGCCACGGAGGAATGTTTGATGCACTGACCAAACTTTCTTTGAGCATTGGTGAAGCATATGAGCAGGCTTCTGTGCATGGGGACTTACATCTTGGTGATCTGCATCTTATAAGGCTTGAAGATGACCATGATAAACAAAACATGGATAGAAGTACTCCCATTTGGGTTGCTTTAGGTGTGGTTCAGTCTTACAATCCAAGGCGTAAAGTTCCCCGGAGTAAGATCTCACTTGTCCACTTGGAAAGTTGCTTATCGAAGGCAGCATTTTCAGCCACACAACATTCTGCATCAATCCATATGCCCCGTATTGGTTATCAAGATGGATCAGATCGTTCAGAGTGGTACACCATAGAACGTCTTCTACGAAAATACGCTTCCATTTACAGTATCAAGATATATATACTATTATCGTCGACAATCCCGGTGAAACTTCAGGCTGAATTCACATCAGATGTCTCGGGAAGGATAGTTCTAGCGAGCACAGAATGGCCAAATGGAGGAGGATTTGGGGAGGAAGGCACTGGTAAGGAAACTGTTTACGGAGAAATGTCTAAACAAAGGTACGATGATATTGATTATCAAAAAGGATGGATGGAGTATAGTACATTTCAGGAGATTGTTTTCGGTAAGTGTCCATTTTGGATTCAATTTCATAATATCCCTCTGGAAGGAATGAGTAGTGAGAATGCCAAAAAGCCAGGTGATAAAGTAGGTGAGACTGTGTTGGTGGAGAACCCAATTTTGAAAGGGAGGTTCATGAGAAGCTTCATCAAAGCCAGGGTGGTGGTAGATTTGAGTAGACCGCTTGTTGAAGTGAGCGCAGAGGCGGCATGTGGTTTTGAAGTAAGTGATGAATCAGATTTTGCGAAAAAAGGAGAGAATGCGCGTGAATGTGATAAGAGGGTGGAAAAGAAGAAGCCTCAGGGGATAACGAAGGTTGATGGCATTTTGATGAATGGTGACTCTGTAATGGAACCAAAGAAGGTTGGAAGAGAATCAGAATTGTAG 3129 0.4212 MNYQQRLQVVAKIILEHDARTDEAPLNYDDLGIKATLKAHQVEGVSWLIRRYKLGVNVVLVVLCPLSVTDGWVSEIDKFAPKLKVIKYVGGKEYRRSLRRNILEHVKGQSTAVNVLLPFDVLLTTYDIALMDQDFLSQIPWKYAIIDEAQRLKNPSSVLYNVLKEHYVMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTLEEFLSTFKDISDPTSVQDALKVKEPLKILKSILGAFMLRRTKSKLIECGTLVLPPLTELTMMAPLVSLQKKVYMSILRKELPKLLALSSGTSNHQSLQNIVLQLRKACSHPYLFPGIEPEPYEEGEHLVQASGKLLILDLLLQKLHNSGHRVLLFAQMTQTLDILQDFLELRKYSYERLDGSIRAEERFAAIKSFSDPSANLGLNSEADQNVAFVFMISARAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQLNHVLCINLVSKSTIEEVIMQRAEKKLQLSLNVIGDSVQENEDEQTAGVGTYDLKSIIFGLHMFDPSEISDGKFGDTNLSEINAMADKVIAMRDMQISDKDDRKFDVCPRNLLVSHDAKERGSTSLYCDPGLDEASYLSWVKKFEEVSKSSGDSVMELRNRRVLDVEKRLKLEVAKKKAEEKKLYMWEAVGYHSLNVNDPISPPEGGITSDAGSVHFVYGDCSNPSNICPSEPALIFSCVDNSGKWGHGGMFDALTKLSLSIGEAYEQASVHGDLHLGDLHLIRLEDDHDKQNMDRSTPIWVALGVVQSYNPRRKVPRSKISLVHLESCLSKAAFSATQHSASIHMPRIGYQDGSDRSEWYTIERLLRKYASIYSIKIYILLSSTIPVKLQAEFTSDVSGRIVLASTEWPNGGGFGEEGTGKETVYGEMSKQRYDDIDYQKGWMEYSTFQEIVFGKCPFWIQFHNIPLEGMSSENAKKPGDKVGETVLVENPILKGRFMRSFIKARVVVDLSRPLVEVSAEAACGFEVSDESDFAKKGENARECDKRVEKKKPQGITKVDGILMNGDSVMEPKKVGRESEL 1042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g0858 1042 Pfam SNF2-related domain 61 315 IPR000330 GO:0005524|GO:0140658
Dere11g0858 1042 MobiDBLite consensus disorder prediction 1000 1042 - -
Dere11g0858 1042 Pfam Helicase conserved C-terminal domain 339 460 IPR001650 -
Dere11g0858 1042 Gene3D - 59 252 IPR038718 -
Dere11g0858 1042 Gene3D - 254 557 IPR027417 -
Dere11g0858 1042 SMART helicmild6 365 460 IPR001650 -
Dere11g0858 1042 Gene3D Leucine Aminopeptidase, subunit E, domain 1 672 842 IPR043472 -
Dere11g0858 1042 CDD SF2_C_SNF 328 471 - -
Dere11g0858 1042 FunFam Putative helicase CHR10 253 564 - -
Dere11g0858 1042 SMART ultradead3 33 205 IPR014001 -
Dere11g0858 1042 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 61 197 IPR014001 -
Dere11g0858 1042 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 339 507 IPR001650 -
Dere11g0858 1042 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 140 505 IPR027417 -
Dere11g0858 1042 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 21 242 IPR027417 -
Dere11g0858 1042 MobiDBLite consensus disorder prediction 1000 1017 - -
Dere11g0858 1042 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE 61 562 IPR031053 GO:0003678|GO:0006281|GO:0006338
Dere11g0858 1042 SUPERFAMILY Macro domain-like 676 841 IPR043472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g0858 Dere-ChrDere11 16146736 16174013 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g0858 61 497 RAD5 or RAD16-like Gene Family AT3G16600 23.031 5.28e-21 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Dere11g0858 SNF2_N 1.1e-40 CL0023