Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g0856 ATGTTGGAATACGAGTGGGGAAACCCACCATCAACGATAGTACTTACTGGAAACGAAGAAGCCTCCGGTACAGACTCCGACCAAAGCCACCGGCAAATCTTCGACCACTACGCTTCTGCTTCCCATTCCCTATTACCGGGACACCTCCTTCCTCAACAACAGCAACCCGGGCCTACCCACACCACCACCGCCACTACCACCGCTGATTTTTCTCACTACCACTTTAACCCTCAACCCCACCACCCCTCCTTCTTCGACCCACGCGCCTTCCCAGGCGCGTCCTCGTCCTACCCTCCACCTGCAACTCCTCATCCTCCCATGCTTTCGCTTGACCCACTCCCAGCCGTCAACGCCACCCACTGTGGGCCTGGTGGGCTTCTGGTCGTTCCCAAGTCTGAGGACGTCGGCAGGCCGACATACTTCCCGGCGTCCAGAATTGGCCTCAACCTGGGTGGCCGCACGTACTTCTCGTCGTCAGAGGATGACTTTGTGAGCCGGCTCTACCGCCGGTCTAGGCCGGCCGAACCGGGCTCATTGACCATGGGTTCGAACTCGCCCCGGTGCCAAGCCGAGGGCTGCAATGCCGATCTCTCGAACGCCAAGCACTATCACCGCAGGCACAAGGTGTGCGAGTTTCACTCCAAGGCCGCCACCGTCGTTGCCGCCGGGTTGACTCAGCGATTCTGCCAACAGTGTAGCAGGTTCCATCTTCTTTCCGAGTTTGATAATGGAAAACGAAGCTGCAGGAAGAGACTGGCAGATCATAATCGTCGCAGAAGAAAAACTCAGCAGCCAAATCAAGAAATCCTGAAATCCCAGCTTGAAAATGCCCGAAATTCTACTTTTGATAGTGTTTCAAGATCTCCACCGGATTCCGGGGCTCAGGCGATGTCGTCAGTGACAGTGGCGGTGTCGCCGCCGGACTACTTCCGGCAAAGGGCATATCCTAATCAGACTAGTAGTTCATCGGCAACATCAAGCTCCCTGTTCTTCTCAAGCGGGTAG 1005 0.5632 MLEYEWGNPPSTIVLTGNEEASGTDSDQSHRQIFDHYASASHSLLPGHLLPQQQQPGPTHTTTATTTADFSHYHFNPQPHHPSFFDPRAFPGASSSYPPPATPHPPMLSLDPLPAVNATHCGPGGLLVVPKSEDVGRPTYFPASRIGLNLGGRTYFSSSEDDFVSRLYRRSRPAEPGSLTMGSNSPRCQAEGCNADLSNAKHYHRRHKVCEFHSKAATVVAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQQPNQEILKSQLENARNSTFDSVSRSPPDSGAQAMSSVTVAVSPPDYFRQRAYPNQTSSSSATSSSLFFSSG 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g0856 334 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 169 322 IPR044817 GO:0003677
Dere11g0856 334 FunFam Squamosa promoter-binding-like protein 14 179 249 - -
Dere11g0856 334 MobiDBLite consensus disorder prediction 254 334 - -
Dere11g0856 334 MobiDBLite consensus disorder prediction 312 334 - -
Dere11g0856 334 SUPERFAMILY SBT domain 186 265 IPR036893 GO:0003677|GO:0005634
Dere11g0856 334 ProSiteProfiles Zinc finger SBP-type profile. 185 262 IPR004333 GO:0003677
Dere11g0856 334 Pfam SBP domain 188 261 IPR004333 GO:0003677
Dere11g0856 334 MobiDBLite consensus disorder prediction 266 302 - -
Dere11g0856 334 MobiDBLite consensus disorder prediction 71 106 - -
Dere11g0856 334 Gene3D - 179 249 IPR036893 GO:0003677|GO:0005634
Dere11g0856 334 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g0856 Dere-ChrDere11 16089891 16091753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g0856 1 235 SBP-box Gene Family AT1G02065 47.347 1.36e-54 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Dere11g0856 SBP 3.3e-31 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere11g0856 11 16089891 16091753 Dere11g0856 11 16089891 16091753 ECH