Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g0852 ATGGACATGTACGTTTCAGACTGCTTTCGCATTGATGATCTTCTCGACTTCTCCAACGAAGACCTCACCACTTCCTCCTCCTCGTCCTCCACCAACTCCCACCACCGCCAACACCACCACCAGCCGCCGCTTCCTCCCCCGCAAATTCCATTTCACCACCGCCACTTACAATCCTCCTCCGCCACTTTCTGCGATACCTTCCCATGCGCCCCCTCCACCGACTTCACCGCTGATCTATGCGTCCCCAACGATGACGTAGCGGAGCTAGAATGGCTCTCGCAATTCGTGGACAACTGCTTCCACGACATCCCGTTGGAGAACGAGATACCGCTTGGCCCCTCCGCTCTCCAATCCGACACGTCGTTTCCCAGCAAAGCTCGCAGCAAGCGTTCGAGAGCATCCGGTCCAACTGCCGGGAAATCTAGACCTAAAACTGAGGGAAACGGCGGGTCGTCTTCCTCCTCGGGAGAGGGATCAGGTGTGCGCAGGTGCACCCACTGCGCATCGGAGAAAACCCCGCAATGGCGAACCGGACCGCTGGGACCCAAGACGCTGTGCAACGCGTGCGGGGTGAGGTACAAGTCGGGTCGGCTCGTCCCAGAATACCGACCCGCAGCGAGCCCGACGTTTGTGCTGACCCAGCACTCGAACTCTCACCGGAAGGTCCTGGAGCTCCGGAGGCAGAAGGAGCTGGGGATGATGAGGCAGCTGGAGCAGCAGCAAGACCAATGCTATCTTCACCAGCAAGATTTCAAGATTGTTGTTGCGCTTTTTAAGGCTTCTTCAGCACACTTGGTTGCCTTTCTCAGTTTTGACGTTTTCTTCAGTGAAGTTCGTCGTCGTCTGTAG 849 0.5724 MDMYVSDCFRIDDLLDFSNEDLTTSSSSSSTNSHHRQHHHQPPLPPPQIPFHHRHLQSSSATFCDTFPCAPSTDFTADLCVPNDDVAELEWLSQFVDNCFHDIPLENEIPLGPSALQSDTSFPSKARSKRSRASGPTAGKSRPKTEGNGGSSSSSGEGSGVRRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTQHSNSHRKVLELRRQKELGMMRQLEQQQDQCYLHQQDFKIVVALFKASSAHLVAFLSFDVFFSEVRRRL 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g0852 282 SMART GATA_3 158 208 IPR000679 GO:0006355|GO:0043565
Dere11g0852 282 MobiDBLite consensus disorder prediction 22 51 - -
Dere11g0852 282 MobiDBLite consensus disorder prediction 111 163 - -
Dere11g0852 282 Gene3D - 160 208 IPR013088 GO:0006355|GO:0008270
Dere11g0852 282 ProSitePatterns GATA-type zinc finger domain. 164 189 IPR000679 GO:0006355|GO:0043565
Dere11g0852 282 MobiDBLite consensus disorder prediction 113 135 - -
Dere11g0852 282 Pfam GATA zinc finger 164 197 IPR000679 GO:0006355|GO:0043565
Dere11g0852 282 Coils Coil 220 240 - -
Dere11g0852 282 MobiDBLite consensus disorder prediction 144 160 - -
Dere11g0852 282 FunFam GATA transcription factor 154 243 - -
Dere11g0852 282 PANTHER GATA TRANSCRIPTION FACTOR 9 230 - -
Dere11g0852 282 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 162 221 - -
Dere11g0852 282 ProSiteProfiles GATA-type zinc finger domain profile. 162 194 IPR000679 GO:0006355|GO:0043565
Dere11g0852 282 PIRSF Txn_fac_GATA_plant 2 254 IPR016679 GO:0003677|GO:0005634|GO:0045893
Dere11g0852 282 CDD ZnF_GATA 163 210 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g0852 Dere-ChrDere11 15870328 15871550 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g0852 44 241 C2C2-Gata Transcription Factor Family AT2G45050 58.079 3.03e-75 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Dere11g0852 GATA 1.9e-15 CL0167