Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g0843 ATGAATGGCATGGGACTGCCGCGACTTCCGTTGAAACCCGTCACCACCTCCGCCTCCCACCACCGTGCTAGTGGCACCTTGGAGTCCATTGTCAACCAAGCCACTCGCTTCCCCCACCGCAGCAAGTCAATTTCTGGCGGCGACGGCGACAAGTTAGTGCCGTGGTTCGACCCCCACCGAGCAGTCGCAGCGTCAAACACGATGACTATGGACGCCTTGGTGCCGTGCTCGCATCGTACGGACGAGCGGAGCACGGGGATTATGGAGGAATCTATGGGTGGAGGGATCGGCACGTGCGTGGTGGGTTGCTCCACATGTGTGGGGTCTTGCGGCGGGGCTGTTGCTCAGGACGGAGAGACCGGCTTCGCCGCGAGACGCAGTGCGGTGGCGCGTGTGCCGGTAGGCCGCGAATGGAGTACTCAAAGTGTGAGTGGGAGAGATAGCTATCACGTGCCCCACGCGTGCGACGGGGAGGTGGATGTGGGTTGCGCTTCAACCTCAATGGGTTCGCCGGAAAATACCATCTCCGCCGGGTGGTGCACGAAGACCACCGTCGCCGATGACCATGATTCTAGAGAAGACAGTGATGAGGCAGACAAGAAGAAAAGAACATCAAAATCTTCAGTTTCTGCTAAGAGGCGTAGAGCTGCCGATGTACACAATCAATCTGAAAGAAAAAGGAGAGATAAGATAAACCAAAGGATGAAGACTTTACAAAAGCTGGTCCCAAACTCTAGTAAGACTGACAAAGCTTCAATGCTGGATGAGGTAATAGACTATCTGAAGCAGCTTCAAGCACAAGTGCAAATGATGAGTAGAATGAGCTTCTCTTCTATGATGCTGCCAATGACCATGCAACAACAACTTCAAATGCCGATGATGGCTCCGATGGGAATGGGACTAGGTATGGGTATGCAAGGCATGGGCATGGGCATGGGCATGGGTATGGGTATGGGCATGGACATGAATGTCATGGCTCGCCCTAACATCCCCAACATCCCTCCCATGCTCCACCCTTCCACTGCCTTCATGCCTATGGCCCCGTGGGATGCTTCCGGTGCCGGCGATCGCCTGCAGGGGGCTCCAGCGATGACGCCAATGGATGCATACAGTAGGATAGCTGCTATGTATCAGCAGCTGCAGCAAGGTTCAGCATCTACTAACTCCAAGAGCTGA 1176 0.5502 MNGMGLPRLPLKPVTTSASHHRASGTLESIVNQATRFPHRSKSISGGDGDKLVPWFDPHRAVAASNTMTMDALVPCSHRTDERSTGIMEESMGGGIGTCVVGCSTCVGSCGGAVAQDGETGFAARRSAVARVPVGREWSTQSVSGRDSYHVPHACDGEVDVGCASTSMGSPENTISAGWCTKTTVADDHDSREDSDEADKKKRTSKSSVSAKRRRAADVHNQSERKRRDKINQRMKTLQKLVPNSSKTDKASMLDEVIDYLKQLQAQVQMMSRMSFSSMMLPMTMQQQLQMPMMAPMGMGLGMGMQGMGMGMGMGMGMGMDMNVMARPNIPNIPPMLHPSTAFMPMAPWDASGAGDRLQGAPAMTPMDAYSRIAAMYQQLQQGSASTNSKS 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g0843 391 CDD bHLH_AtPIF_like 215 269 IPR047265 -
Dere11g0843 391 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 81 388 IPR031066 -
Dere11g0843 391 MobiDBLite consensus disorder prediction 186 234 - -
Dere11g0843 391 MobiDBLite consensus disorder prediction 1 22 - -
Dere11g0843 391 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 215 264 IPR011598 GO:0046983
Dere11g0843 391 Pfam Helix-loop-helix DNA-binding domain 220 265 IPR011598 GO:0046983
Dere11g0843 391 SMART finulus 221 270 IPR011598 GO:0046983
Dere11g0843 391 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 219 281 IPR036638 GO:0046983
Dere11g0843 391 Gene3D - 209 275 IPR036638 GO:0046983
Dere11g0843 391 FunFam transcription factor UNE10 isoform X1 210 275 - -
Dere11g0843 391 Coils Coil 221 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g0843 Dere-ChrDere11 15786206 15790225 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g0843 1 370 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 48.042 8.95e-64 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere11g0843 HLH 5.2e-14 No_clan