Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g0839 ATGGTATCAGCGGGAGGCCCACCTTTGTACGACTCAGGATATGGGTGTGGTGCTTGTTACGAGGTGAAGTGCACAGAGAATTCGGCATGTTCAGGAAGCCCAGTGAGCGTAGTGATCACTGATGAGTGTCCTGGGTGTGGGTCTTCTCAGAGAGTTCACTTTGACTTGAGTGGCACTGCTTTTGGTGCCATGGCTGCTTCAGGTCAGGCCGAGCAGTTACGCAATGTTGGCATGCTGGAGATTCAGTATCAAAGAGTGGAGTGTAACTATCCAGGAGTATCAATAGCATTCAAAGTGGACTCTGGATCCAACGCATACAGTTTTGCTGTATTGATAGAATATGTGAATGGAGATGGCACCCTAGCCAGTGTTGAACTCAAGGAAGCTCAGGACTCAGCTTCATGGCGCGCCATGCAACATTCCTGGGGCGCAGTTTGGAAGCTCGACTCCGGCGCACCGCTTCAGGCTCCATTCTCAATCCGGCTAACCTCGTCGGTCTCTGACGAGACTGCTGTGGCAAACAATGTGATTCCGGCAGGGTGGAGTGCTGGTCAGACTTATCAATCTGTCGTGAACTTTTGA 582 0.512 MVSAGGPPLYDSGYGCGACYEVKCTENSACSGSPVSVVITDECPGCGSSQRVHFDLSGTAFGAMAASGQAEQLRNVGMLEIQYQRVECNYPGVSIAFKVDSGSNAYSFAVLIEYVNGDGTLASVELKEAQDSASWRAMQHSWGAVWKLDSGAPLQAPFSIRLTSSVSDETAVANNVIPAGWSAGQTYQSVVNF 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g0839 193 PRINTS Expansin/Lol pI family signature 6 24 IPR007118 GO:0005576
Dere11g0839 193 PRINTS Expansin/Lol pI family signature 76 92 IPR007118 GO:0005576
Dere11g0839 193 PRINTS Expansin/Lol pI family signature 175 189 IPR007118 GO:0005576
Dere11g0839 193 PRINTS Expansin/Lol pI family signature 135 149 IPR007118 GO:0005576
Dere11g0839 193 Gene3D - 89 190 IPR036749 -
Dere11g0839 193 SUPERFAMILY Barwin-like endoglucanases 1 92 IPR036908 -
Dere11g0839 193 PRINTS Major pollen allergen Lol pI signature 144 161 IPR005795 GO:0005576|GO:0019953
Dere11g0839 193 PRINTS Major pollen allergen Lol pI signature 24 34 IPR005795 GO:0005576|GO:0019953
Dere11g0839 193 PRINTS Major pollen allergen Lol pI signature 65 80 IPR005795 GO:0005576|GO:0019953
Dere11g0839 193 PRINTS Major pollen allergen Lol pI signature 4 15 IPR005795 GO:0005576|GO:0019953
Dere11g0839 193 PRINTS Major pollen allergen Lol pI signature 97 112 IPR005795 GO:0005576|GO:0019953
Dere11g0839 193 PRINTS Major pollen allergen Lol pI signature 113 128 IPR005795 GO:0005576|GO:0019953
Dere11g0839 193 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 106 189 IPR007117 -
Dere11g0839 193 Pfam Expansin C-terminal domain 95 178 IPR007117 -
Dere11g0839 193 SUPERFAMILY PHL pollen allergen 95 189 IPR036749 -
Dere11g0839 193 SMART dpbb_1 2 83 IPR007112 -
Dere11g0839 193 PANTHER EXPANSIN-B3 1 193 - -
Dere11g0839 193 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 1 93 IPR007112 -
Dere11g0839 193 Pfam Lytic transglycolase 3 82 IPR009009 -
Dere11g0839 193 Gene3D - 1 88 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g0839 Dere-ChrDere11 15704318 15705848 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g0839 1 193 Expansin Gene Family AT1G65680 65.803 1.38e-90 265