LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere11g0836	ATGGCTCTATTCAGTCTTCGACTTGTATCCTCACATTTCTTCACTCTTGTCGCTTTCTTTTCATTCTTCTTAATAGAGAGCTCTTCCTCTTGCTCCAACCCTAGAAAGCTTCTTAATGCTTCATACGCCTCTGCTTCAGATTGGTCTCCTGCAGATGCCACCTGGTACGGAAGCCCCACCGGCGCTGGAAGTGATGGGGGTGCTTGTGGATATGGCAGTGCAGTAGAGCAACCTCCATTTTCTTCAATGATATCAGCAGGAGGCCCACCTCTGTATGAATCAGGCAAAGGATGTGGTACTTGTTACGAGGTGAAGTGCACAGGGAATTCGGCATGTTCAGGAAACCCAGTGAGCGTAGTGATCACTGATGAGTGTCCTGAGTGTGGCTCTTCCCAGAGATTTCACTTTGATTTGAGTGGCACTGCTTTTGGTGCCATGGCTGCTTCAGGTCAGGCCCAGAACCTACGCAATGTTGGCAAGTTGGAGATTCAAGTGAACTGTAACTATCCAGGAGTATCAATAGCTTTCAAAGTGGACTCTGGATCCAACTCATTCTATTTCGCTACAGTGATAGAATATGAGGATGGAGATGGTGATCTTGCCAGCGTTGAACTGAAGGAAGCCCAGGGCTCAGCTTCATGGCGCGCCATGCAACAATCTTCTGGTGCAGTCTGGAAGCTCAACTCTGGCTCGCAACTTCAGGCTCCGTTCTCGCTCCGGCTGACCTCGGCGGAGTCCCACAAGACCGTCGTGGCAAACAATGTGATTCCGGCGAGGTGGAGTCCCGGTCAGACCTATCGATCTGTCGTGAACTTCAAATGA	822	0.5	MALFSLRLVSSHFFTLVAFFSFFLIESSSSCSNPRKLLNASYASASDWSPADATWYGSPTGAGSDGGACGYGSAVEQPPFSSMISAGGPPLYESGKGCGTCYEVKCTGNSACSGNPVSVVITDECPECGSSQRFHFDLSGTAFGAMAASGQAQNLRNVGKLEIQVNCNYPGVSIAFKVDSGSNSFYFATVIEYEDGDGDLASVELKEAQGSASWRAMQQSSGAVWKLNSGSQLQAPFSLRLTSAESHKTVVANNVIPARWSPGQTYRSVVNFK	273

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere11g0836	273	SUPERFAMILY	Barwin-like endoglucanases	38	171	IPR036908	-
	Dere11g0836	273	Gene3D	-	171	272	IPR036749	-
	Dere11g0836	273	Gene3D	-	33	167	IPR036908	-
	Dere11g0836	273	SUPERFAMILY	PHL pollen allergen	174	268	IPR036749	-
	Dere11g0836	273	ProSiteProfiles	Expansin, Cellulose-binding-like domain profile.	185	268	IPR007117	-
	Dere11g0836	273	PRINTS	Major pollen allergen Lol pI signature	192	207	IPR005795	GO:0005576\|GO:0019953
	Dere11g0836	273	PRINTS	Major pollen allergen Lol pI signature	106	116	IPR005795	GO:0005576\|GO:0019953
	Dere11g0836	273	PRINTS	Major pollen allergen Lol pI signature	223	240	IPR005795	GO:0005576\|GO:0019953
	Dere11g0836	273	PRINTS	Major pollen allergen Lol pI signature	176	191	IPR005795	GO:0005576\|GO:0019953
	Dere11g0836	273	PRINTS	Major pollen allergen Lol pI signature	86	97	IPR005795	GO:0005576\|GO:0019953

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere11g0836	Dere-ChrDere11	15688850	15691124	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere11g0836	29	272	Expansin Gene Family	AT1G65680	61.694	3.57e-107	310

Showing 1 to 1 of 1 entries