Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g0836 ATGGCTCTATTCAGTCTTCGACTTGTATCCTCACATTTCTTCACTCTTGTCGCTTTCTTTTCATTCTTCTTAATAGAGAGCTCTTCCTCTTGCTCCAACCCTAGAAAGCTTCTTAATGCTTCATACGCCTCTGCTTCAGATTGGTCTCCTGCAGATGCCACCTGGTACGGAAGCCCCACCGGCGCTGGAAGTGATGGGGGTGCTTGTGGATATGGCAGTGCAGTAGAGCAACCTCCATTTTCTTCAATGATATCAGCAGGAGGCCCACCTCTGTATGAATCAGGCAAAGGATGTGGTACTTGTTACGAGGTGAAGTGCACAGGGAATTCGGCATGTTCAGGAAACCCAGTGAGCGTAGTGATCACTGATGAGTGTCCTGAGTGTGGCTCTTCCCAGAGATTTCACTTTGATTTGAGTGGCACTGCTTTTGGTGCCATGGCTGCTTCAGGTCAGGCCCAGAACCTACGCAATGTTGGCAAGTTGGAGATTCAAGTGAACTGTAACTATCCAGGAGTATCAATAGCTTTCAAAGTGGACTCTGGATCCAACTCATTCTATTTCGCTACAGTGATAGAATATGAGGATGGAGATGGTGATCTTGCCAGCGTTGAACTGAAGGAAGCCCAGGGCTCAGCTTCATGGCGCGCCATGCAACAATCTTCTGGTGCAGTCTGGAAGCTCAACTCTGGCTCGCAACTTCAGGCTCCGTTCTCGCTCCGGCTGACCTCGGCGGAGTCCCACAAGACCGTCGTGGCAAACAATGTGATTCCGGCGAGGTGGAGTCCCGGTCAGACCTATCGATCTGTCGTGAACTTCAAATGA 822 0.5 MALFSLRLVSSHFFTLVAFFSFFLIESSSSCSNPRKLLNASYASASDWSPADATWYGSPTGAGSDGGACGYGSAVEQPPFSSMISAGGPPLYESGKGCGTCYEVKCTGNSACSGNPVSVVITDECPECGSSQRFHFDLSGTAFGAMAASGQAQNLRNVGKLEIQVNCNYPGVSIAFKVDSGSNSFYFATVIEYEDGDGDLASVELKEAQGSASWRAMQQSSGAVWKLNSGSQLQAPFSLRLTSAESHKTVVANNVIPARWSPGQTYRSVVNFK 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g0836 273 SUPERFAMILY Barwin-like endoglucanases 38 171 IPR036908 -
Dere11g0836 273 Gene3D - 171 272 IPR036749 -
Dere11g0836 273 Gene3D - 33 167 IPR036908 -
Dere11g0836 273 SUPERFAMILY PHL pollen allergen 174 268 IPR036749 -
Dere11g0836 273 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 185 268 IPR007117 -
Dere11g0836 273 PRINTS Major pollen allergen Lol pI signature 192 207 IPR005795 GO:0005576|GO:0019953
Dere11g0836 273 PRINTS Major pollen allergen Lol pI signature 106 116 IPR005795 GO:0005576|GO:0019953
Dere11g0836 273 PRINTS Major pollen allergen Lol pI signature 223 240 IPR005795 GO:0005576|GO:0019953
Dere11g0836 273 PRINTS Major pollen allergen Lol pI signature 176 191 IPR005795 GO:0005576|GO:0019953
Dere11g0836 273 PRINTS Major pollen allergen Lol pI signature 86 97 IPR005795 GO:0005576|GO:0019953
Dere11g0836 273 CDD DPBB_EXPB_N 48 164 - -
Dere11g0836 273 PANTHER EXPANSIN-B3 24 272 - -
Dere11g0836 273 Pfam Expansin C-terminal domain 174 257 IPR007117 -
Dere11g0836 273 PRINTS Expansin/Lol pI family signature 254 268 IPR007118 GO:0005576
Dere11g0836 273 PRINTS Expansin/Lol pI family signature 47 62 IPR007118 GO:0005576
Dere11g0836 273 PRINTS Expansin/Lol pI family signature 88 106 IPR007118 GO:0005576
Dere11g0836 273 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Dere11g0836 273 PRINTS Expansin/Lol pI family signature 214 228 IPR007118 GO:0005576
Dere11g0836 273 Pfam Lytic transglycolase 85 150 IPR009009 -
Dere11g0836 273 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 66 164 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g0836 Dere-ChrDere11 15688850 15691124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g0836 29 272 Expansin Gene Family AT1G65680 61.694 3.57e-107 310