Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g0834 ATGGCTTTGATTGGGGATCAGCAACAATCAAACTTGAAGCACTTCTGTAAAATCTGCAAAAAAGGGTTCGGGTGTGGGAGAGCTCTGGGAGGACACATGAGGGCGCACGGCATCGGCGACGAAAGCTGGCACGTCGACGACGACGATGACCCCGCAAGTGACTGGGATGGCGACAATGTGGCACCGAGCACCAAGCGCATGTATGCTCTAAGGACAAATCCAAATAGACTAAAGAGTTGCAGGGTGTGTGAGAATTGTGGTAAAGAGTTTTTGTCGTGGAAGTCTTTTCTCGAACATGGAAAGTGTACCTCCGATGTTGTCGAGTCTCCGATCTCGTCGCCAGGTTGTGGCGGTGACGCCGATGACGGCATGGGCCAGAGAGGTTGCGGTTGGTCTAAAAGGAAGAGATCATTTAGAGCCAAAGTAGGTAACTTCAATTCTAATTGCCCTTCAAGTGAAGAAGAAGACCTCGCCAACTGTTTGATAATGTTGTCCAATGCCATCGTCGATCCTTTGGTGGCCGCCGAGCCGGAAGAGTCGTGTGCCTCCGCTAGCAGAGACGAGGAGAGAAGAAACCCTATAAACTTCATAACTCCAATGTCGTATAGAGTTCCTAGTACTACTGCGGATCATAAAGCTAAAGGGGTGGCTCCTAAAGGCTTGTTTGAATGCAAAGCATGCAAGAAAGTTTTCAATTCCCACCAAGCTCTAGGTGGCCATAGAGCCAGCCACAAGAAGGTTAAGGGCTGCTTTGCCTCACGGCTTGACCGCCTTGACGGTAGTCCCGGCAGTGGCGGTGCCAGTGGGGACGATGATGGCATTACCCATAAAGAGTTTCTTCCTACAAAATCAAATTATGAACACCATGGCTCCAATGCCACGTTATTAATGGCATCTTCATCCAAGAAAAAAGCGAAAGTTCATGAATGTTCCATATGTCACCGGACTTTCTCGTCCGGACAAGCATTGGGTGGACACAAGAGATGCCACTGGATCACACCAAATGCGCCGGACTCCTCCACATTGGCTAGGTTTCAACAGTTACAAGACCATATGGAGCGTATGAATCAAATTCCCAAGTTTGATAACTCAGAGCCACTTGATCTCAAGCTCGATCTCAACCTTCCCGCTCCGGCCGATCACCCGACACGACGGGACTTGTCGACGGAAATTTACTTGCAGCCATGGGTAGGAGTAACAAAAGAGAAAGATAATAATACTAACAATAGTCAATGTCACAGTCAGAGCTACCGTGTCGACCACCACCGTCACCATTGTCATGAGACTGAAAATGACAATGATGAGGACAAAAATAATAACAACAGTAAAGTTTTGATGCCAAATGTGGAAGATGAAGCAGACAGTAAGGTGAAGTTAGCAAAACTAAGTGAGCTAAAGGACGTGAACATAGGAGGGAGTTCTTCACCGTGGTTGCAGGTGGGGATTGGCTCAACTACTGGTGTAGGAGCTGACCCATAA 1479 0.4807 MALIGDQQQSNLKHFCKICKKGFGCGRALGGHMRAHGIGDESWHVDDDDDPASDWDGDNVAPSTKRMYALRTNPNRLKSCRVCENCGKEFLSWKSFLEHGKCTSDVVESPISSPGCGGDADDGMGQRGCGWSKRKRSFRAKVGNFNSNCPSSEEEDLANCLIMLSNAIVDPLVAAEPEESCASASRDEERRNPINFITPMSYRVPSTTADHKAKGVAPKGLFECKACKKVFNSHQALGGHRASHKKVKGCFASRLDRLDGSPGSGGASGDDDGITHKEFLPTKSNYEHHGSNATLLMASSSKKKAKVHECSICHRTFSSGQALGGHKRCHWITPNAPDSSTLARFQQLQDHMERMNQIPKFDNSEPLDLKLDLNLPAPADHPTRRDLSTEIYLQPWVGVTKEKDNNTNNSQCHSQSYRVDHHRHHCHETENDNDEDKNNNNSKVLMPNVEDEADSKVKLAKLSELKDVNIGGSSSPWLQVGIGSTTGVGADP 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g0834 492 MobiDBLite consensus disorder prediction 468 492 - -
Dere11g0834 492 ProSiteProfiles Zinc finger C2H2 type domain profile. 222 249 IPR013087 -
Dere11g0834 492 ProSitePatterns Zinc finger C2H2 type domain signature. 224 244 IPR013087 -
Dere11g0834 492 Gene3D Classic Zinc Finger 11 102 - -
Dere11g0834 492 SUPERFAMILY beta-beta-alpha zinc fingers 221 330 IPR036236 -
Dere11g0834 492 ProSitePatterns Zinc finger C2H2 type domain signature. 310 330 IPR013087 -
Dere11g0834 492 ProSiteProfiles Zinc finger C2H2 type domain profile. 308 330 IPR013087 -
Dere11g0834 492 MobiDBLite consensus disorder prediction 468 482 - -
Dere11g0834 492 ProSitePatterns Zinc finger C2H2 type domain signature. 16 36 IPR013087 -
Dere11g0834 492 SMART c2h2final6 222 244 IPR013087 -
Dere11g0834 492 SMART c2h2final6 308 330 IPR013087 -
Dere11g0834 492 SMART c2h2final6 14 36 IPR013087 -
Dere11g0834 492 Pfam C2H2-type zinc finger 14 36 - -
Dere11g0834 492 Pfam C2H2-type zinc finger 222 246 - -
Dere11g0834 492 Pfam C2H2-type zinc finger 307 332 - -
Dere11g0834 492 SUPERFAMILY beta-beta-alpha zinc fingers 14 100 IPR036236 -
Dere11g0834 492 PANTHER OS02G0659100 PROTEIN 6 486 - -
Dere11g0834 492 MobiDBLite consensus disorder prediction 421 439 - -
Dere11g0834 492 MobiDBLite consensus disorder prediction 402 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g0834 Dere-ChrDere11 15672004 15673482 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g0834 117 375 C2H2 Transcription Factor Family AT1G02040 37.308 2.66e-32 124