Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g0832 ATGATGATGGAGAAGCACAAGTGCAAGCTTTGCTTCAGGAGCTTCTCTAATGGTAGAGCCTTGGGGGGTCACATGAGGTCTCACATGGTGAACCTTGCGGTTCATCCCAAACCGGAGGAGCCATCACTGGCCCAGCTCAGCTTCGAGGCCGAGTCAGCTTCGTCGTCATCGTCCTCGGAAGGAGAAGACGACAAGGGTCTCTGCTATGGCCTGAGAGAGAACCCAAAGAGGAGCTTTCGGCTTGTGGATCCTGAGTTCTCGTTCGCCGTGGAGACCGGCTCTGTAATTCTTCAAGACCGAGAGAGCGAGACCGAGTCGTCGAAGAACCCAACTCGGAGAAGATCGAAAAGGGCATGCAACCAATACGATCATCATCACCAAAAGGATCAAGTTCATGAGCAAGAGGTCTTCAAGAAGCTGAAATCCGCGAACAAACAGAGTAATAAGCACAATCATAATATCAATAATAATGAAAAGAGCGAGTCGTGCTGGGTTGAGCCTGAGCCAGTGAGTACAATTTCTGATGCAACCACCGAAGAAGACGTCGCATTTTGCCTTATGATGTTGTCTAGGGACAAATGGAAGAGAAAAGAAGAATTGCGAGGAAACCATGACGAAGAAGACGAAGAAGAGGAAGATGAAGAGGAAGAGGAGGAAGAAGAAGAGGACGACGACGAAGGCGAAAGATCCTTGGAAGATTCTGATGAATCCGAAGAGCTGAAATCGTCCAAGACCCGATCAGTTCGGGGAAGGTACAAATGCGAGACGTGTAAGAAAGTGTTTCGATCTTATCAAGCACTTGGTGGGCACAGAGCTAGTCACAAGAAGATCAAAGTGCCCATATACGAACCCGAATTGGAGCGAGAAAATGCTCCCATGGCGGAAAAGAAAATCCATGAATGCCCAGTTTGTTTCAGAGTGTTCGCTTCGGGTCAAGCGCTTGGTGGGCACAAGAGAACTCACGTGAGTCACGTGACTGCATCTGGTTCTGGTTCTGCCACTCCGGTTCAGACTTCTTGTACCAAGTTCGGAGATAACAATTTGATAGATCTTAACCTTCCTGCTCCAGTTGAAGACGATGATGTTAGTCAAATCGAAAATTCTGCGGTTTCAGATGCAGAATTTCTCAAACCCAATGCACAACTTATGATGATCCAAAGGTAA 1164 0.4768 MMMEKHKCKLCFRSFSNGRALGGHMRSHMVNLAVHPKPEEPSLAQLSFEAESASSSSSSEGEDDKGLCYGLRENPKRSFRLVDPEFSFAVETGSVILQDRESETESSKNPTRRRSKRACNQYDHHHQKDQVHEQEVFKKLKSANKQSNKHNHNINNNEKSESCWVEPEPVSTISDATTEEDVAFCLMMLSRDKWKRKEELRGNHDEEDEEEEDEEEEEEEEEDDDEGERSLEDSDESEELKSSKTRSVRGRYKCETCKKVFRSYQALGGHRASHKKIKVPIYEPELERENAPMAEKKIHECPVCFRVFASGQALGGHKRTHVSHVTASGSGSATPVQTSCTKFGDNNLIDLNLPAPVEDDDVSQIENSAVSDAEFLKPNAQLMMIQR 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g0832 387 MobiDBLite consensus disorder prediction 47 62 - -
Dere11g0832 387 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 3 380 IPR044303 GO:0006355
Dere11g0832 387 Coils Coil 197 226 - -
Dere11g0832 387 ProSitePatterns Zinc finger C2H2 type domain signature. 254 274 IPR013087 -
Dere11g0832 387 MobiDBLite consensus disorder prediction 99 165 - -
Dere11g0832 387 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Dere11g0832 387 Pfam C2H2-type zinc finger 251 276 - -
Dere11g0832 387 Pfam C2H2-type zinc finger 6 29 - -
Dere11g0832 387 Pfam C2H2-type zinc finger 299 321 - -
Dere11g0832 387 MobiDBLite consensus disorder prediction 147 162 - -
Dere11g0832 387 ProSiteProfiles Zinc finger C2H2 type domain profile. 252 279 IPR013087 -
Dere11g0832 387 Gene3D Classic Zinc Finger 249 321 - -
Dere11g0832 387 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 28 IPR013087 -
Dere11g0832 387 ProSitePatterns Zinc finger C2H2 type domain signature. 301 321 IPR013087 -
Dere11g0832 387 MobiDBLite consensus disorder prediction 46 69 - -
Dere11g0832 387 MobiDBLite consensus disorder prediction 122 142 - -
Dere11g0832 387 MobiDBLite consensus disorder prediction 198 245 - -
Dere11g0832 387 SUPERFAMILY beta-beta-alpha zinc fingers 251 321 IPR036236 -
Dere11g0832 387 ProSiteProfiles Zinc finger C2H2 type domain profile. 299 326 IPR013087 -
Dere11g0832 387 MobiDBLite consensus disorder prediction 204 233 - -
Dere11g0832 387 SMART c2h2final6 299 321 IPR013087 -
Dere11g0832 387 SMART c2h2final6 6 28 IPR013087 -
Dere11g0832 387 SMART c2h2final6 252 274 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g0832 Dere-ChrDere11 15642313 15643476 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g0832 3 365 C2H2 Transcription Factor Family AT3G60580 41.534 1.54e-66 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere11g0832 zf-C2H2_6 9.4e-12 CL0361