Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g0802 ATGTCTAGTTTTCGCTTACTAACGATTCTTCTACTTCTTCCCTTTCTACTTTCGCTTTCCTCTTTTGCTTATGGCTACTCATTGAACGAAGTGAAAGCATGGTGTAGCCAAACCCCTAACCCTCAACCATGTGAGTACTTCTTGTCCACCAAGCCTTTCAACAAAGCCATCAAGCAAAAGTCCGATTTCTTCAAAATTTCACTCGAACTTGCTCTAGAAAGAGCACAGAAGGGTCAAGCCAACACTGTTTCGCTAGGCCCTAAGTGTAGGAACCCAAGTGAGAAAGCTGCATGGTCTGATTGCCTTGAGCTCTACAAGCAAACCATTGCCAAGCTCAACAAAACCATCGACCCCAACATCAAAAACTCCCAAACCGATGCTCAAACATGGCTCAGCACAGCACTGACCAACCTCGAGACCTGCAAATTCGGGTTTTATGACCTTGGAGTTCAAGACTACGTGTTGCCCATGATGTCCAACAACGTAACTAAGTTGCTAAGCAACACCTTGTCTCTTAACAAGGTTCCATTCAAAGTACCGAGTTTCAGATATGGGTTGCCCAAGTGGGTTAAGCCCGGTGACCGGAAGCTGCTGCAGGCGGCGTCTCCAGCATCTCAGGCGAATGTCGTGGTGGCGAAAGACGGCTCTGGAAAGTACACAACGTTGAAGGAGGCCGTAGATGCTGCACCAGAGAATAGCAAGACGAGGTATGTGATATACGTGAAGGCAGGAGTGTACAACGAACAAGTTGAGATTAAAGCAGATTACATCATGTTGGTGGGAGATGGTATTGGGAAAACTATAATCACTGGTAGCGCAAGTGTTGGAGGAGGCACCACAACCTTCCGTTCAGCCACTGTTGCTGCTGTTGGGGATGGATTTATTGCTCAAGACATCACATTCAGAAACACAGCAGGACCAGAAAACCACCAAGCCGTGGCATTCCGATCAGGCTCAGATCTGTCGGTGTTCTACAGATGCAGCTTCGAGGGTTATCAAGACACACTGTACGTCCACTCCGAGAGACAATTCTACAAAGACTGTGATGTCTACGGCACTGTCGACTTCATCTTCGGAAACGCAGCCTCCATTCTGCAAAACTGCAACATCTACGCTCGAACCCCTCCTCAAGGAACCATCACATTCACTGCTCAAGGTCGAACCGATCCGAACCAAAACACAGGGATCATCATCCACAACTCCAAGGTCACAGGAGCCTCGGACTTCGTCTCTACGAATGTGAAAACGTTCCTGGGAAGGCCATGGAAGGAGTACTCAAGAACGGTGTACATGAAGACTTTCCTTGATGGATTGATCAACCCAGAAGGGTGGATGGAGTGGAGTGGTAACTTTGCGTTGGACACACTGTATTATGCAGAGTATGCGAACACGGGACCTGGTTCTAACACAACGAATAGGGTTAAGTGGAAGGGGTACCATGTGATTGGTGCGTCTGAGGCCTCGCAGTTCACTGTTGATAGCTTTCTTAACGGGAGCTCGTGGGTTCCAGCCTCTGGTGTGCCTTTCACTGCTGGTCTTTGA 1542 0.4831 MSSFRLLTILLLLPFLLSLSSFAYGYSLNEVKAWCSQTPNPQPCEYFLSTKPFNKAIKQKSDFFKISLELALERAQKGQANTVSLGPKCRNPSEKAAWSDCLELYKQTIAKLNKTIDPNIKNSQTDAQTWLSTALTNLETCKFGFYDLGVQDYVLPMMSNNVTKLLSNTLSLNKVPFKVPSFRYGLPKWVKPGDRKLLQAASPASQANVVVAKDGSGKYTTLKEAVDAAPENSKTRYVIYVKAGVYNEQVEIKADYIMLVGDGIGKTIITGSASVGGGTTTFRSATVAAVGDGFIAQDITFRNTAGPENHQAVAFRSGSDLSVFYRCSFEGYQDTLYVHSERQFYKDCDVYGTVDFIFGNAASILQNCNIYARTPPQGTITFTAQGRTDPNQNTGIIIHNSKVTGASDFVSTNVKTFLGRPWKEYSRTVYMKTFLDGLINPEGWMEWSGNFALDTLYYAEYANTGPGSNTTNRVKWKGYHVIGASEASQFTVDSFLNGSSWVPASGVPFTAGL 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g0802 513 FunFam Pectinesterase 202 513 - -
Dere11g0802 513 ProSitePatterns Pectinesterase signature 2. 350 359 IPR033131 -
Dere11g0802 513 CDD PMEI-like_3 33 174 - -
Dere11g0802 513 SUPERFAMILY Pectin lyase-like 202 512 IPR011050 -
Dere11g0802 513 Gene3D - 203 513 IPR012334 -
Dere11g0802 513 Pfam Pectinesterase 208 498 IPR000070 GO:0030599|GO:0042545
Dere11g0802 513 Pfam Plant invertase/pectin methylesterase inhibitor 30 172 IPR006501 GO:0004857
Dere11g0802 513 ProSitePatterns Pectinesterase signature 1. 233 252 IPR018040 -
Dere11g0802 513 SMART PMEI_2 26 172 IPR006501 GO:0004857
Dere11g0802 513 NCBIfam pectinesterase inhibitor domain 9 175 IPR006501 GO:0004857
Dere11g0802 513 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 175 IPR035513 -
Dere11g0802 513 PANTHER PECTINESTERASE 16 503 - -
Dere11g0802 513 FunFam Pectinesterase 26 175 - -
Dere11g0802 513 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 30 175 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g0802 Dere-ChrDere11 14938528 14941425 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g0802 1 513 Carbohydrate Esterase AT2G45220 65.184 0.0 695