Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g0801 ATGGCAGATTTTCGCTTACTCATGGGCTTGACACTTATATTCGTTCCCCTTCTACTTTCCTCTTCAGTTTCTGGGTACTCTTGGAACGATGTTAAGGTTTGGTGCAGCCAAACCCCAAATCCTCAACCTTGTGAGTATTTCCTGAACAGTAGTCCTACTCGCAGCCAGAAGCTCATCAAACACAAAAATGATTTTCTCAAGCTTTCACTGCAACTGGCGCAAGAGCGAGCGCTGAAAGGCCATGCAAACTCTCTTCCATTAGGCCCAAAGTGCAGGAACTCGCTTGAGAAAGCAGCATGGGCGGATTGCATTGAGCTTTACGAGCAAGCCATCCACAGACTCAACAAAACCTTAGACCCCAACACGAAGTGCTCACAAGCAGATGCTCAAACGTGGCTCAGTACAGCTCTCACCAACCTCGAGACATGTAAAGCTGGGTTCTACGAGCTTGGGGTTCAAGACTACTTGTTGCCCTTGATGTCCAACAATGTTACCAAGTTGCTAAGCAACACTTTGGCTATAAACAAGGTTCAATACCAAGAGCCGAGTTATAAAGATGGGTTCCCTACATGGGTCAAGCCCGGTGATAGGAAGCTTTTGCAGAGGTCATCTGCAGCTCCTCGGCCTAACGTTGTGGTGGCTAAAGATGGCTCTGGCAAGTACACAACTTTGAGTGCTGCCATAAATGCAGCACCAAAGAGTAGCAGTGGGAGATACGTGATATACGTGAAAGCTGGAATTTACAATGAACAGGTTGAGATAAAGGCAAACAATATCATGTTGGTGGGAGATGGTATTGGAAAGACAATAATCACCGGCAGCAAAAGTGTTGGAGGAGGCACCACAACCTTCCGTTCAGCCACTGTTGCTGTTGTAGGAGATGGGTTTATTGCTCGAGACATCACATTCAGGAATACTGCTGGAGCATCAAACCATCAAGCGGCGGCACTGCGTTCAGACACAAAGTTTCCAGCACTAGCAAAAGCTAACATCAGAGAAGCTTTGACCACTTTGTTGAATGAGTTGAACAAAGTGGTCCATCCTCCGTTTTCATCTCTGAACAAAGCTATAGCTAAGCTTGTGAGGCAGAGACATGAGTATTGGAGGAAGCAAATGGCATAG 1122 0.4652 MADFRLLMGLTLIFVPLLLSSSVSGYSWNDVKVWCSQTPNPQPCEYFLNSSPTRSQKLIKHKNDFLKLSLQLAQERALKGHANSLPLGPKCRNSLEKAAWADCIELYEQAIHRLNKTLDPNTKCSQADAQTWLSTALTNLETCKAGFYELGVQDYLLPLMSNNVTKLLSNTLAINKVQYQEPSYKDGFPTWVKPGDRKLLQRSSAAPRPNVVVAKDGSGKYTTLSAAINAAPKSSSGRYVIYVKAGIYNEQVEIKANNIMLVGDGIGKTIITGSKSVGGGTTTFRSATVAVVGDGFIARDITFRNTAGASNHQAAALRSDTKFPALAKANIREALTTLLNELNKVVHPPFSSLNKAIAKLVRQRHEYWRKQMA 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g0801 373 Pfam Pectinesterase 210 334 IPR000070 GO:0030599|GO:0042545
Dere11g0801 373 CDD PMEI-like_3 34 176 - -
Dere11g0801 373 ProSitePatterns Pectinesterase signature 1. 235 254 IPR018040 -
Dere11g0801 373 Gene3D - 205 346 IPR012334 -
Dere11g0801 373 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 177 IPR035513 -
Dere11g0801 373 PANTHER PECTINESTERASE 18 339 - -
Dere11g0801 373 FunFam Pectinesterase 26 177 - -
Dere11g0801 373 NCBIfam pectinesterase inhibitor domain 11 176 IPR006501 GO:0004857
Dere11g0801 373 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 30 177 IPR035513 -
Dere11g0801 373 Pfam Plant invertase/pectin methylesterase inhibitor 31 174 IPR006501 GO:0004857
Dere11g0801 373 SUPERFAMILY Pectin lyase-like 204 333 IPR011050 -
Dere11g0801 373 SMART PMEI_2 26 174 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g0801 Dere-ChrDere11 14903600 14910308 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g0801 1 344 Carbohydrate Esterase AT2G45220 59.420 6.32e-143 414